- Indigenous knowledge of agrobiodiversity makes the news in Indonesia.
- Reconstructing the strawberry.
- And reconstructing the history of cultivated citrus fruits.
- ICRISAT millet breeders get an a new toy.
- Plenty of diversity in the cultivated grape still. And it’s going to need it.
- Biodiversity (and agrobiodiversity?) needed for farm productivity. Well I never! But more mixed results available too. What’s a poor boy to think?
- SPOT 5 imagery can be used to identify crops. In Texas. But in Tanzania?
- Agricultural biodiversity and subsistence traditions, Part 2. In the Ozarks. But in Omo? (And here’s Part 1.)
Maize mystery solved
Joost van Heerwarden and co-workers ((van Heerwaarden J, Doebley J, Briggs WH, Glaubitz JC, Goodman MM, de Jesus Sanchez Gonzalez J, & Ross-Ibarra J (2010). Genetic signals of origin, spread, and introgression in a large sample of maize landraces. Proceedings of the National Academy of Sciences of the United States of America PMID: 21189301)) have solved a problem in our understanding of maize domestication. Previous work had shown that maize originated from Balsas teosinte, Zea mays subspecies parviglumis, a wild species that occurs in low and mid-elevation regions of south-west Mexico ((Matsuoka Y, Vigouroux Y, Goodman MM, Sanchez G J, Buckler E, & Doebley J (2002). A single domestication for maize shown by multilocus microsatellite genotyping. Proceedings of the National Academy of Sciences of the United States of America, 99 (9), 6080-4 PMID: 11983901)). This made the Rio Balsas area, where parviglumis occurs, the most likely area of maize domestication. This was corroborated by Piperno et al.‘s ((Piperno DR, Ranere AJ, Holst I, Iriarte J, & Dickau R (2009). Starch grain and phytolith evidence for early ninth millennium B.P. maize from the Central Balsas River Valley, Mexico. Proceedings of the National Academy of Sciences of the United States of America, 106 (13), 5019-24 PMID: 19307570)) discovery of 8,700 years old maize remains in that area; the oldest evidence of maize unearthed to date.
The problem was that the maize land races genetically most similar to parviglumis are not found there. They occur in the Mexican highlands. And that’s awkward, particularly because highland maize has a rather different set of ecological adaptations than lowland maize.
Van Heerwaarden et al. say this is a paradox caused by the role of another wild species: Zea mays subspecies mexicana. This species occurs in the highlands, and it is inter-fertile with cultivated maize. The tricky thing is that because the two wild species, parviglumis and mexicana, both referred to as teosinte, are closely related, more closely to each other than to their cultivated cousin, geneflow from mexicana makes the genes of highland maize look more like those of parviglumis!
This means that you cannot directly identify the most ancestral maize populations from genetic similarity with their putative ancestor. Instead, Van Heerwaarden et al. estimated ancestral gene frequencies from cultivated maize populations, without direct reference to the wild species. And, Bingo! Western lowland populations are indeed more ancestral than the highland populations. Maize did originate in the lowlands, and from there it spread to the highlands and to other parts of the Americas.
A brave new world for crop wild relatives
Thanks to Dr Brian Ford-Lloyd of the University of Birminghan in the UK for the following contribution.
A ground breaking publication in Nature Genetics points to the future for the genetic evaluation of crop wild relative germplasm. A group of Chinese scientists have used Illumina Next Generation Resequencing to produce whole genome sequences of 17 wild species of soybean. Only 17 wild species? But this is just the start for evaluating crop wild relatives on a completely different level than before — adding a different perspective to the analysis of genetic diversity, the identification of important adaptive differences between species, and locating novel allelic variation that can be used in crop improvement. One important result from the work is that they uncovered genetic variation in the wild species that has been clearly lost in cultivated material.
Nibbles: Nagoya, Pomegranate Juice, Fort Collins, Sudan, Americas, Brachiaria, Chile, Nutrition, Deppe
- Possibly interesting article on Nagoya ABS Protocol, but I’ll never know.
- Pomegranate juice fraud?
- Fort Collins genebank in the (local) news.
- Sudan to become self-sufficient in wheat. Sorghum also involved.
- James of the Giant Corn gives idiot pontificator a well-deserved drubbing.
- Brachiaria forage not a “magic bullet” shock.
- Chile moans about lack of benefit sharing, but fails to do anything about it.
- DG of Bioversity beats agricultural biodiversity for nutrition and health drum shock.
- Carol Deppe has a web site. (she’s the Backyard Vegetable Breeder person.)
Nibbles: Maasai, Arbutus, Yak, China, USA
- ILRI video on helping herders with that climate change thing.
- Nutritional composition of Strawberry tree fruits.
- The genetic history of the yak.
- Chinese food archaeology: noodles and fruits.
- Colonial food in early America.