- Podcast double: Georgian kitchen gardens (with pix) and Italian citrus.
- Domestication infographics are now officially a thing.
- Feeding the world with vegetable research, courtesy of AVRDC. Need to register, alas.
- Zambia biofortifies. Maybe they didn’t register for the above.
- Camels as biocultural artifacts.
- European Seed Association breaks down the tumultuous last 18 months of the European seed sector.
- “It takes more than 40 different species to make a simple lunch…”
Domestication and distribution: comparing the niches of wild, feral and cultivated tetraploid cottons
We’re trying something new for us this week. Dr Geo Coppens co-authored an interesting paper 1 recently which brings together a number of our concerns: domestication, diversity, crop wild relatives, spatial analysis… He’s written quite a long piece about his research, which we’ll publish here in three instalments, over the next few days days, starting today. Enjoy!
Niche Modelling has been increasingly coupled with genetic studies for the study of plant domestication and/or diffusion (e.g. Thomas et al., 2012, on cacao; Russell et al., 2014, on barley). However, there has been relatively little interest in the effects of domestication and cultivation on distribution. Comparing the distributions of wild and cultivated hog plums in Meso- and Central America, Miller and Knouft (2006) found that the crop’s environmental range was significantly wider than that of its wild relatives observed in the dry forests, which was suspected to result from selection and attendant adaptation under domestication.
This interpretation seems related to a combination of common ideas about species habitats, distribution modelling and the effects of human selection and diffusion on crop adaptation. Most correlative species distribution modelling has been based on the use of abiotic environmental variables, and the best documented are climatic ones. As a result, many authors think of their models in terms of climatic envelopes corresponding to the physiology and phenology of species, and remain cautious about their capacity to capture biotic effects. Therefore, it appears logical to relate the wider crop environmental range, as compared to their wild relatives, to adaptive selection under/after domestication.
Results obtained on perennial cotton from Mesoamerica and the Caribbean underline the interest of a more ecological interpretation (Coppens d’Eeckenbrugge and Lacape, 2014). Among the four independently domesticated cotton species, Gossypium hirsutum L. is by far the most widely cultivated, even in warm temperate conditions, at latitudes of up to 30°. It shares its AD allotetraploid genome with the other American domesticated cotton, G. barbadense L., native to Ecuador and Peru, and three wild species, G. darwinii Watt (Galapagos), G. mustelinum Miers ex Watt (Northeastern Brazil), and G. tomentosum Nutt. ex Seem. (Hawaii). The absence of American diploid species bearing the A genome led Hutchinson et al. (1947) to the conclusion that the A parent was an African domesticate brought by man, implying that the first allotetraploid cottons were cultivated.
On the contrary, Fryxell (1979) and Sauer (1967) recognized wild populations of G. hirsutum in Yucatán and various localities in the Caribbean. The existence of these “truly wild cottons” (TWC) was progressively substantiated by their particular seed traits (Stephens, 1965) and the isozyme study of Brubaker & Wendel (1994), indicating that the TWC populations of northern Yucatán were the likely ancestors of Mesoamerican cultivated races. More recently, molecular genetics supported Fryxell’s views, confirming that all five allotetraploid cotton species originated from a single hybridization event that took place during the Pleistocene, some 1-2 million years ago (Wendelet al. 2010). However, no systematic studies were undertaken and TWC populations were very poorly represented in subsequent studies of tetraploid cotton genetic resources. In particular, the status of TWC populations from the Caribbean was not clarified. A major practical problem was the difficulty to distinguish TWC populations from feral (secondarily wild) populations.
To be continued…
Brainfood: Tea cores, Amazonian domestication, Sicilian remedies, Odisha wild veggies, Insect biomass, Energy crops, Adoption, Field size, Rye diversity, Crab breeding
- Worldwide core collections of tea (Camellia sinensis) based on SSR markers. From 788 to 192 doesn’t seem like a great deal.
- Crop Domestication in the Amazon. The first arrivals were not just hunter-gatherers.
- Plant genetic resources and traditional knowledge on medicinal use of wild shrub and herbaceous plant species in the Etna Regional Park (Eastern Sicily, Italy). 71 wild species are used for medicine, but the properties of most are known by only a few informants.
- Traditional knowledge on wild edible plants as livelihood food in Odisha, India. 86 wild species are eaten. No word on the pattern of distribution of knowledge, at least in the abstract.
- Insects in the human food chain: global status and opportunities. The real potential is in animal feed production.
- Energy crops: Prospects in the context of sustainable agriculture. They have a role in Europe to reduce effects of climate change while supporting food security and preserving the environment, but most are in early stages of domestication, and we’ll need more efficient enzymatic systems for the conversion of cellulose, and the development of multiple products.
- Are there systematic gender differences in the adoption of sustainable agricultural intensification practices? Evidence from Kenya. Not for improved seeds, apparently.
- A contemporary decennial global Landsat sample of changing agricultural field sizes. Nine hotspots of field size change, driven by different factors, and not all in same direction. I wonder if you can use this as a proxy for levels of agricultural biodiversity?
- Genome-wide characterization of genetic diversity and population structure in Secale. Limited diversity in improved material, and no structure. Need those genebanks.
- Comparison of the culture performance and profitability of wild-caught and captive pond-reared Chinese mitten crab (Eriocheir sinensis) juveniles reared in grow-out ponds: Implications for seed selection and genetic selection programs. Wild is best. For now.
Brainfood: Goat diversity, Sheep diversity, Camel keeping, Weird Zambian cattle, Pepper diversity, Strawberry diversity, Breeding wheat, Sustainable cacao, Food supply diversity
- The characterization of goat genetic diversity: Towards a genomic approach. A single Neolithic origin.
- Genome-wide patterns of adaptation to climate-mediated selective pressures in sheep. Adaptation to local climates has been important.
- Characterisation of camel breeding practices in the Ansongo Region, Mali. Diversity of practices, diversity of breeds.
- Gynomimicry in the Dwarf Gwembe breed from Zambia. The males mimic the secondary sexual characters of females, presumably because they’ve been selected to do so.
- Evaluation of a diverse, worldwide collection of wild, cultivated and landrace peppers (Capsicum annuum) for resistance to Phytophthora fruit rot, genetic diversity and population structure. No completely resistant lines out of 177, 2 pretty good ones, the better ones confined to 2 of 4 genetic clusters.
- Evaluation of strawberry (Fragaria L.) genetic resources on resistance to Botrytis cinerea. Out of 107 accessions in the German national genebank, 5 were pretty good, 4 of them F. vesca.
- Redesigning the exploitation of wheat genetic resources. Allele mining is out, genome-wide selection is in.
- Making biodiversity-friendly cocoa pay: combining yield, certification and REDD for shade management. Even if you increase yields by 50%, that may not be enough to stop farmers converting from traditional agroforestry. Enter ecolabelling and REDD.
- Measuring nutritional diversity of national food supplies. Production diversity is a good predictor of dietary diversity, but only for low income countries; otherwise income and trade are better. Dietary diversity associated with key health outcomes.
Brainfood: Ethiopian wild veggies, Cold tolerant rice, Chickpea genomics, Improved tilapia, Wild cassava oil, Chinese horses, Chinese melon, Seed sampling, Tomato spp sequencing
- Wild and semi-wild leafy vegetables used by the Maale and Ari ethnic communities in southern Ethiopia. 30 of them.
- Collection and Conservation of Cold Adapted Indigenous Rice Landraces from Western Ghats, South India. 56 of them.
- Exploring Germplasm Diversity to Understand the Domestication Process in Cicer spp. Using SNP and DArT Markers. 3 populations among domesticated types; more diversity in the wilds.
- Genetically-Improved Tilapia Strains in Africa: Potential Benefits and Negative Impacts. Mean present value of introducing an improved strain to Ghana is 1% of GDP, but you could get same with better management. Both would of course be best.
- Diversity in oil content and fatty acid profile in seeds of wild cassava germplasm. Some species could be oil crops.
- The Study of Genetic Diversity and Phylogenetic Evolution in Indigenous Horses (Equus caballus) of Gansu. If I understand the abstract correctly, this suggests, among other things, that some local horse breeds can be traced back to Przewalski’s Horse, maybe.
- Microsatellite Diversity, Population Structure, and Core Collection Formation in Melon Germplasm. In China. Frankly not nearly as interesting as the horse story.
- Optimal sampling of seeds from plant populations for ex-situ conservation of genetic biodiversity, considering realistic population structure. 25–30 individuals per population from few but widely-spaced populations.
- Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole-genome sequencing. 20x more diversity in the wilds than the cultivated, correlated with habitat.
- Understanding Sustainable Diets: A Descriptive Analysis of the Determinants and Processes That Influence Diets and Their Impact on Health, Food Security, and Environmental Sustainability. The determinants of sustainability are agricultural, health, sociocultural, environmental and socioeconomic, and fiddling with one to improve it may screw up another.
- Anchoring durum wheat diversity in the reality of traditional agricultural systems: varieties, seed management, and farmers’ perception in two Moroccan regions. Farmers grow both improved varieties and landraces, the latter mainly for their quality characteristics.
- Unraveling the nexus between water and food security in Latin America and the Caribbean: regional and global implications. Production has increased, but at the cost of the natural capital of the region, and nutritional problems persist.