Mendel’s Garden No. 27: Genes, but not as we know them

Mendel.jpg Happy Befana from a freezing Rome. Got myself in a bit of a tizz with all this Blog Carnivalia stuff. I thought I was hosting Mendel’s Garden here, but it seems I agreed to do it at The Other Place instead. Not sure why, especially after my recent idleness there. So I decided to cross-post here, just in case readers are aching for a slab of hard science.

Quintessence of Dust examines one of the challenges to evolutionary theory, that large populations will adapt more rapidly because they contain a greater range of beneficial mutations lying in wait, as it were, for conditions to change. Only, it ain’t so. Steve Matheson explains new investigations of clonal interference and the difference it makes to estimates of mutation rates and speed of adaptation. Also, it touches on sex.

There’s a new kid on the block too. Ian Dworkin has just launched Genes Gone Wild, which he says will distinguish between “Gene X for Disease Y” — as seen on the news — and “a variant of gene X influences disease Y”. Yes, Ian says, “things are sadly more complicated than we might like”. Good luck with your mission Ian.

As I contemplate a “procedure” (ghastly euphemism) myself, I’m attracted to Sandra’s post Personalized Medicine is on the way (but not quick enough) over at Discovering Biology in a Digital World. Genetic screening can offer all sorts of useful and valuable information, but only if the patient and the doctor know how to make use of the results. Sandra’s point is that things are moving so quickly that we’re all in danger of being left behind — and if you want a reason to catch up, perhaps a lawsuit would focus your attention.

A little technical argie-bargie is getting aired over at Evolgen, where RPM asks, only somewhat rhetorically, Do people still use microarrays? They do, but there are other techniques they could be using, and perhaps getting better answers. Having laboured mightily, long ago, to understand both Sanger and Maxam-Gilbert, and more recently to get to grips with Solexa, I’ll just say, There’ll always be a better tool just around the corner.

And now, if I may be permitted, allow me to introduce all super-duper, shining, modern, sequence-reading geneticists to a woman who is, I swear, the living incarnation of Mendel’s Garden. Rebsie Fairholm is following in The Monk’s footsteps with a pea breeding project that is, to me at any rate, the most fascinating thing on the web at the moment. Her latest post on the subject is Welcome home, little peas, but every single one of the posts in her pea-breeding project is worth reading.

peaalternating.jpg

Rebsie’s explanations and photographs will bring Mendel’s Garden to life for you, your loved ones, your students, and indeed the entire curious world. Speaking of which, I don’t seem to recall Larry Moran’s post Identity of the Product of Mendel’s Green Cotyledon Gene (Update) getting any exposure, so I will further abuse my privileged position by linking to it now.

And if you’ve made it this far, you’ll be waiting for me to blow our own trumpet. So here goes: The hype goes on, and El Hombre de la Papa, a video of Carlos Ochoa, who died last month. Two very different takes on the application of Mendelian genetics to feeding people.

Next host for Mendel’s Garden is Steve Matheson hisself, at Quintessence of Dust. Submit posts to Steve or via the Blog Carnival page. You could also volunteer to host..

Featured comment: Taro

From Penny:

The task force was created at the urging of taro farmers. It’s job is to help focus local research, policy and agency support where it is reallly needed in order to revitalize taro as a crop, revive cultivar diversity in the field, and increase education and understanding of taro and farmers needs in Hawaii.

We’re taking a break

2691769777_b882a786c8_o

So, where’s all the agrobiodiversity news? Dunno. Maybe they’ve given up? Nah. Maybe they’re on holiday? Yeah, that’ll be it. So, when d’you suppose they’ll be back? Dunno. Better keep looking. …

Not to get too cute here, but in what has become an annual tradition, the bloggers of the Agricultural Biodiversity Weblog are taking a brief break. Two weeks, or thereabouts. Max.

Afore we go, though, we thought we’d share a last bit of news: Even in Christmas trees, diversity is important:

Choosing the right Christmas tree species must obviously be carefully considered prior to planting. The species must suit the site with respect to soil depth, drainage, fertility and texture. Investigate the potential market for each species that will suitably grow on the site and make decisions accordingly. Growing more than one species will permit some diversity and flexibility at market time. Remember, the first tree sales will be 7 to 10 years in the future and predictions of species preferences by consumers, e.g. Fraser fir versus Scots pine, will be important for marketing.

It must be true, I read it on the intertubes. Oh, and an afterthought: real trees are greener.

Flickr photo by Vanessa Pike-Russell, used under a Creative Commons Licence.

Featured 3

Robert, on Nibble This, asks:

Why is it – you think – that some peoples go outrageously overboard with chili consumption (to my taste, that is), while others are quite careful in keeping the spiciness under control. Chance? Human genetics? Alternative addictives?

Good question.