DOI see the future of genebank documentation?

Mike Jackson, indefatigable blogger and former manager of the IRRI genebank (among other things), is on a mission.

I’m on the editorial board of Genetic Resources and Crop Evolution. I have proposed to the Editor-in-Chief that any manuscript that does not include the germplasm accession numbers (or provenance of the germplasm used) should be automatically sent back to the authors for revision, and even rejected if this information cannot be provided, whatever the quality of the science! Listing the germplasm accession numbers should become a requirement for publication.

Draconian response? Pedantic even? I don’t think so, since it’s a fundamental germplasm management and use issue.

As regular readers will suspect, we’re totally behind Mike’s pedantically draconian suggestion here. We’ve said much the same thing ourselves on occasion. We’ve even taken it a step further and suggested globally unique identifiers for each genebank accession. Well, not entirely coincidentally, Genesys has just announced a major new feature along these lines:

Genesys database was upgraded to allow for enhanced handling of archived accession data. Accession records in Genesys are assigned a Universally Unique Identifier and are accessible with Persistent Uniform Resource Locators.

A step in the right direction? Over to you, genebank data geeks.

Nibbles: Svalbard double, AgAtlas upgrade, Ornamental database, Wild apples, Genetic garden, Sandalwood trade, Amazon dams, Body bacteria, ICRISAT blog, African greens, Aquatic camel, Mujer empowerment

More of a proper catch-up Nibbles later, but these should hold you for a while.

Vanuatu field collections survive cyclone

A smidgen of good news from the Pacific island country of Vanuatu, recently hit so cruelly by Cyclone Pam. This just in 1 from Roger Malapa, who’s in charge of the various field genebanks at the Vanuatu Agricultural Research and Technical Centre (VARTC) on the beautiful island of Santo, which was apparently less badly affected than others.

Minor damage to the banana collection but overall, everything is fine at VARTC and Santo. Yes there is enough material in the multiplication plots, mainly the root crops. I have just selected an early maturing variety on February: two-month harvest. We are harvesting our cassava now so cuttings can be prepared.

SPC’s Centre for Pacific Crops and Trees (CePaCT) does hold duplicates of some of these collections in vitro. But you can never have enough safety duplication in the Pacific.

Here’s what a bit of the root and tuber crop collection at VARTC looked like a few years ago when I last visited.

santo

Brainfood: Resilience and diversity, Cold tolerant rice, Old baobabs, VIR, Local adaptation, Prunus phylogeny, Bactris mating, Land use change, Wheat landraces, Amazonian agrobiodiversity

Monitoring plant diseases

I think we may have blogged about ProMED before, but I don’t feel at all guilty about another shout-out. I have no idea to what extent the whole thing is automated, but if there’s anything in the press about a disease — of plants, livestock or humans — it gets a little write up on the website, and a dot on the map. And you can sign up for email alerts or subscribe to an RSS feed, or indeed to their Twitter feed or Facebook page if that’s your vice. I sometimes dream of doing something similar for all kinds of threats to agrobiodiversity.

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And while we’re on the subject, just a reminder that there’s a new new app for Pacific pests and pathogens, courtesy of those nice people at Pestnet.