What does it cost to conserve crop diversity in Europe?

There’s a document on the NordGen website entitled Towards a European Plant Germplasm System — The third way 1 which advocates setting up a “European Plant Germplasm System” along the lines of the US National Plant Germplasm System. Written by Lothar Frese, Anna Palmé, Lorenz Bülow and Chris Kik — all from big European genebanks — the paper “builds on the results of the PGR Secure project funded under the EU Seventh Framework Programme.”

This is what the European system would look like:

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What, no Svalbard? Even the NPGS uses that. Also, there are separate germplasm committees for each crop in the US, rather than one committee to rule them all. That makes more sense if the idea is to have input from the users, as in the US; but maybe that’s not it, as in the diagram the committee is not linked to the users. So what is it for? Anyway, how much would this all cost?

As a rule of thumb, the ex situ conservation including related research costs approximately 60 € / accession and year (personal communication of Dr. U. Lohwasser of 23 May, 2014 and Dr. P. Bretting of 22 May 2014). 1,725,315 accessions are kept in European genebanks resulting in an assumed total annual costs for ex situ conservation of 103,518,900 € per year for the whole of Europe. In view of the 34 billion € spent for agri-environmental measures within the EU-28 a budget of 100 million € / year is not unreasonable. The question rather is whether the stakeholder groups and policy makers feel that having a European Plant Germplasm System is worth this amount.

Well, let’s fact-check that. The operating budget for the NPGS is $44,600,000 per year, for 569,000 accessions, which is about $78 per accession, or about €70 at today’s exchange rate. That’s probably a conservative estimate, I’m reliably informed, as the NPGS gets a lot of in-kind support from the universities with which it cooperates — but it’s the right ballpark anyway. The international genebanks of the CGIAR get around $20 million a year to maintain and make available their ca. 700,000 accessions, which seems very cheap, but includes very little of those “related research costs.”

What we don’t know — or at least I don’t — is what European countries are actually spending on their genebanks at the moment. It seems maybe the authors don’t know either, because another of the 12 recommendations they make, besides establishing the system, is to inventory the money available. Here are all the recommendations, conveniently filleted out for you. Look at number 6:

1. We suggest the establishment of a European Plant Germplasm System.
2. Establish a legal basis for conservation of plant genetic resources for food and agriculture in the EU.
3. Establishment of a technical EU infrastructure for the organisation of conservation of plant genetic resources for food and agriculture measures.
4. Establishment of an EU information infrastructure for conservation of plant genetic resources for food and agriculture.
5. Disentangle juridically and financially genebank tasks from plant breeding research and plant breeding tasks at the national level.
6. Inventory of financial means available to genebanks and estimation of financial means needed for a fully functioning European network of genetic resource collections (ex situ, in situ and on-farm).
7. Increase the visibility of plant genetic resources collections on the internet.
8. Develop a European platform for long-term crop specific pre-breeding programmes.
9. Clear uncertainties concerning Access and Benefit Sharing (ABS) rules so that breeding companies can take economic decisions on a safe legal basis.
10. Research should be strengthened to better understand the amount and geographic distribution of genetic diversity present in priority crop gene pools.
11. The European agro-NGOs and their influence should be strengthened.
12. Establishment of a European Network of Private-Public-Partnership programmes for evaluation of plant genetic resources in Europe.

My own recommendation would be to start with that inventory of financial means. It would be nice to know how close to that €100 million we in fact are — and how much of it, if any, would need to be new money.

Nibbles: Old breweries, Old grape seeds, New beer, Sheep breeds, Indian rice landraces, GM rice in China, Barley breeding, Botanical tipple, Mata Atlantica conservation, Quinoa

Livestock mapping comes of age

For your information, we have been beavering away since then, collecting more recent and detailed sub-national livestock statistics and disaggregating these using a slightly modified modelling approach, and 1 km multi-temporal, Fourier-processed MODIS imagery from the University of Oxford. We hope in time to produce global coverage for the most important livestock species, and make these publically available, but we have focussed our initial efforts on poultry and pigs in Asia.

ResearchBlogging.orgThat was Timothy Robinson in a comment on a post of ours back in 2012, and he’s been true to his word. There was a paper last year 2, and there’s a wiki for the data.

pigs

I suggested in my earlier post that it was possible to get the impression that a lot of different players were working in parallel, if not in actual competition, on livestock distribution mapping. If that was indeed the case, and perhaps it was just an impression, it all seems to have been resolved in the intervening couple of years, thank goodness. According to the wiki:

In a multi-partner collaboration centered on the International Livestock Research Institute (ILRI), the Food and Agriculture Organization of the United Nations (FAO) and the Université Libre de Bruxelles (ULB-LUBIES), global maps of livestock distributions and production systems are being revised and updated.

Only fair to add that I landed on this via a blogpost on Vox, of all places, which has been getting quite a lot of attention on Twitter, for some reason. It seems to have escaped my early warning system last year.

New version of banana genebank information system goes live

Great to see a new version of the Musa Germplasm Information System (MGIS) released. The URL is unchanged. The key improvements are listed as follows (slightly edited):

1. All information on a single accession can be viewed in one page
2. Taxonomic content of each collection is summarized graphically.
3. Easier data filtering and export functions.
4. Users can share comments on any accession.
5. Accessions can be requested online via the Musa Online Requesting system (MORS) with a modified interface.

I particularly like the ability to comment, though you do have to register for that. The data cover 2,281 accessions from six genebanks around the world, 3 including 1,456 in the International Transit Centre (ITC) managed by Bioversity International in Belgium:

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The ITC data are also in Genesys, which shows 1,529 accessions rather than 1,456. I assume MGIS is the more up to date, but I’m unclear why there should be a difference. 4

You can search among the 2,281 accessions on name or number; or by filtering by any combination of genebank, species, subspecies, genome group (AAB, say), subgroup (Cavendish, say), country of origin, ploidy, whether there’s a photo, whether it’s been included in a molecular study, and availability. Searching is pretty fast.

Each accession gets a nice page summarizing all the pertinent information.

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That information can include morphological characterization data, and illustrations, as you can see above, but I could not find a way of searching the database based on a particular descriptor or combination of descriptors. You get a map when collecting locality is known, but you can’t map multiple accessions, as far as I could see. You’d have to do that in Genesys, I guess.

If you want to download data, you have to cut and paste accession numbers into a form on another page, and then you get a CSV or XLS. It didn’t look to me like you could export either morphological characterization data or molecular data. I have to say I was disappointed by the whole export thing.

So, some good things, some not so good things in this new version of MGIS. I’ll be keeping an eye on it for further developments. And continue playing with it, of course. Maybe I missed something.

Nibbles: Avocado rising, Cynobiofuel, Ginseng in situ, MGIS, Strawberry breeding, Maca biopiracy, Certification