- Google Map of British protected food names. Where’s fish and chips? Or the cream tea. Japan next?
- Indian genebank in the record books for characterizing wheat.
- And with no help from CIMMYT!
- Getting those damn smallholders to innovate already.
- Ghana gets a new cowpea to innovate with. Well, almost.
- And there I was thinking smallholders had been innovating for thousands of years. Even in the frozen north. Winter may be coming, but we’ve got grog. Which you know is good for you.
- As is chocolate, so go ahead and submit your heirloom cacao beans for evaluation. But don’t be tempted to cheat. We’ll know if you are.
- Oh damn, it’s Green Week.
- The story behind the methods used in a recent paper on dog diversity. Wonkish.
- We seem to have slipped off the Berry Go Round treadmill, which means we missed some gorgeous photos of broad beans.
- And another belated treat: UNESCO’s round up of World Heritage agricultural landscapes.
- …one of which is not tea in China, but maybe it should be, before it’s too late.
Nibbles: Rice show, Central Asian forests, Research archives, Opium, Data stuff, Indian seeds, Ag expansion
- Rice symposium wows Hong Kong.
- Fruits and nuts of Kyrgyzstan.
- Rothamstead’s archives look totally cool.
- One does wonder whether Afghanistan could learn something from Colorado.
- When did continued collaboration become news, CIAT?
- Cherokee continue to save seeds.
- Agricultural expansion a continuing a bad thing for nature.
Filling the gaps in Lacunas
A paper in Biodiversity and Conservation caught my eye: “Lacunas: a web interface to identify plant knowledge gaps to support informed decision-making.” 1 I knew that Brazilian biodiversity researchers had been working hard on bringing their data together, and this sounded like the information was now ready to be put to some use:
SpeciesLink’s thematic network, INCT-Virtual Herbarium of Plants and Fungi and the List of Species of the Brazilian Flora, are used as primary data sources to develop Lacunas, an information system with a public web interface that generates detailed reports of the status of plant species occurrence data. Lacunas also integrates information about endemism, conservation status, and collecting efforts over time.
I couldn’t resist doing a quick roadtest of Lacunas, of course. It’s available in both Portuguese and English, and it has a simple, intuitive interface, so it wasn’t a chore. Naturally I selected a crop wild relative: Oryza grandiglumis (Döll) Prod.
You get a nice map. And a bunch of tables summarizing various statistics (both for the exact species name and for phonetically similar species names, which is a nice touch):
- Number of records per year collected
- Total number of records available in different herbaria in the speciesLink network
- Total number of records available in the speciesLink network by georeferencing status
- Total number of records available in the speciesLink network with distinct geographic coordinates
I grabbed a screenshot of one of the tables, because that was the only way I could see to save the results, and I thought I might blog about Lacunas one day. It was a pity about that saving thing, though, because the statistics the portal provides are genuinely useful in giving an idea of the quality and quantity of the data we have on different species in Brazil. For example, for our wild rice there are 31 records in all, but only 4 have original georeferences. Fortunately, for 15 of those that don’t have original latitude and longitude coordinates, it was possible to infer georeferences from other associated data. But that still leaves a significant number of herbarium specimens which cannot be used in mapping the distribution of the species. Anyway, I left a comment to that effect on the website. Then I moved on to other stuff, and the blogging got pushed down the to-do list, what with one thing and another.
Imagine my surprise then when I got notification of a fix within a couple of days. A fix which allows me to link to a results page, rather than include that clunky screengrab here. And imagine my further surprise when the guy who provided the fix turned out to be an old friend. Small world. Anyway, thanks to Sidnei for the help, and the chat.
Now, it would be great to compare the Lacunas data with those in the Crop Wild Relatives Global Atlas. But first I need to convince the developers of that incredible resource to make sharing results a little easier.
Nibbles: Kangkong, Fun labwork, Breadfruit beer, Saving juniper, Green Week
- Ipomoea aquatica in the news.
- DNA extraction made fun.
- Samoa launches breadfruit beer.
- Gin maker protects his livelihood.
- The Treaty goes to Green Week.
Nibbles: Agroecology, Genomics meet, African botany meet, Gardens, ISHS, Market chains, KFC in Africa, Wine terroir, Vanilla research, Dye mushrooms, French agrobiodiversity research, Indian genebank, Policy newsletter, Eels, Neolithic grain
- USDA should think about agroecology more. Or at all?
- The latest from PAGXXII. Lots on domestication, genebanks, crop improvement, all that cool stuff.
- There’s also AETFAT going on, and it’s just as cool. Maybe more so. Though less socially networked, I guess.
- How public gardens should build up living plant collections. You’d have thought they’d know.
- An update on plant genetic resources from ISHS. Lots happening…
- How to support agrobiodiversity through sustainable sourcing.
- KFC must have read that slideshare above.
- Breaking down the terroir. And not for the first time.
- Does vanilla have terroirs? I bet it does. Should ask the world’s expert.
- Dye mushrooms? Are you kidding me?
- ARCAD, DIADE: No matter how you spell it, lots of French interest (and money) in crop and livestock genetics.
- Likewise in India, it looks like from this piece on NBPGR.
- The Bioversity Policy Unit is apparently still alive and kicking.
- European eels a conservation success story?
- Let the ancient DNA sequencing begin!