Next week is AASW6, the sixth edition of the Africa Agriculture Science Week. There’s a blog. A Twitter hashtag, #AASW6. A Facebook page. A LinkedIn thing of some description. And side events, of course. Given all this, I hesitate to make the usual offer of space here for anyone who might want to muse about the agricultural biodiversity content of the proceedings. But what the hell, I guess you can never have enough social networking. No, wait…
Wild sorghum and aridity
I’m not entirely sure why, but I get the occasional alert from something called the FAO GeoNetwork when a new dataset comes online. This morning it was global aridity. It’s not really very detailed or anything, but when something like that is available in a format that Google Earth can handle, I can very rarely resist the temptation of clicking on the link. So, in case you’re interested, this map shows the distribution of African wild Sorghum accessions in Genesys (that’s the little blue dots, which you’ll be able to see better if you click on the image — sorry about that) superimposed on that aridity thing.
This suggests to me that if you want really drought-tolerant wild Sorghum germplasm, the Sahel is where to look, rather than southern Africa or South Asia. But what about Australia, I hear you ask? Well, Genesys doesn’t have any wild sorghum from Australia, but GBIF does.
Here we’re looking at herbarium specimens, remember, rather than genebank accessions, but it does seem that Australia may be a slightly better bet for aridity-adapted wild sorghums than Africa. But for hyper-arid adaptation, it’s the Sahara for you.
Root and tuber online mapping bags award
Congratulations to the GIS folks at CGIAR:
RTBMaps — a web-based GIS (Geographic Information Systems) tool to help planners visualize data and analyze options for using roots, tubers and bananas to improve food security, nutrition and income — has been selected for a Special Achievement in GIS (SAG) Award, presented today at the 2013 Esri International User Conference.
The thing is still in Beta, and there’s a lot more to come, both data and functionality:
RTBMaps is being launched with approximately 25 map layers, which are based on data for RTB crop distribution, indicators for poverty and food-security and some production constraints. However, the number of layers will grow as the GIS specialists at the research centers upload maps for additional pests and diseases, social indicators and other pertinent data. The RTB GIS team will also add applications for simple functions such as printing, or downloading maps for use in presentations. The team has also developed a priority setting application that allows users to weight the importance of different criteria — based on their own research, or consultations — and run analyses that result in unique maps.
Actually that priority-setting bit seems to be already there (more on this below). But for sure it will be nice to be able to share the results, which you can’t really do easily at the moment. And to import your own data, like localities of germplasm accessions, say. Which you also can’t do right now.
What can you do? Well, I couldn’t find much in the way of documentation, but playing around on the site suggests that basically what you can do is display those 25 layers in whatever combination you want on a map of the world. The layers include harvested area for potato, sweet potato, cassava, yam, banana and plantain, and a bunch of other variables: biotic (e.g. cassava mealybug climatic suitability), abiotic (e.g. length of growing period), socio-economic (e.g. % children underweight) and management (e.g. N fertilizer application). Each layer comes with a little pop-up which gives you the legend and lets you change its transparency, so that you could, for example, display cassava area together with climatic suitability for the cassava mealybug, and figure out where that pest is likely to do the most harm. You’d have to do that by eye, mind you, by tweaking the transparency settings. Tricky, and not hugely satisfying, but possible.
No, but wait. There’s a “Tools” tab: always a good sign. That allows you to run something called Multi-Criteria Decision Analysis, or MCDA. I think that’s the priority-setting application mentioned above. The way it works is that you choose a crop, then choose from a list of six criteria, and I quote: reduce poverty, food insecurity, nutrition and health, sustainability of natural resources, increase productivity and profit 1, and increase market conditions. So I chose cassava as my crop, and reducing poverty plus nutrition and health as my criteria. You then give a weight to each criterion, 50% each in my case.
Ok, so the next step is to choose indicators for each of your criteria. You’re presented with the same list of 12 indicators for each of the criteria, 2 the first six simply the harvested areas for all the crops in the system 3, the others the following, and again I quote: stunting among children under 5, poverty headcount at USD2 a day, absolute number of poors (sic.) at USD2 a day, irrigation areas, failed season, and accessibility. So I chose the poverty headcount as my indicator for reducing poverty, and stunting as my indicator for nutrition and health. If I had chosen more than one indicator for any of my criteria, I would have been able to give each a weight. But frankly, I was confused enough. Fortunately, I got a little reminder of what I’d done:
So I clicked on “Run analysis…”, though more in hope than expectation…
I am absolutely convinced that it is a huge technical achievement that the resulting analysis took only about 30 seconds. As my friend Glenn Hyman, one of the people involved, said in the press release already quoted above:
…RTBMaps is the most comprehensive and collaborative GIS web-mapping project to be undertaken within the CGIAR system to date. He noted that the cloud technology that it is based on has only become available in recent years.
I have no doubt all of that is true, and admirable. However, I also have to admit that I have little idea what the map produced by this cloud-technological, and most comprehensive and collaborative, web-mapping project actually means. Here is that map:
Let me hazard a guess. What I think the map may mean is that if your goal is to reduce poverty and improve nutrition and health, in equal measure, and you want to do this via cassava, the areas in red are…what? The places where you would have the best chance of succeeding? The places where you’re going to have the biggest impact? The places where you should go on holiday?
I should have gone to the workshop, I guess. Maybe if I had, I’d be able to understand the whole thing more, and explain it better. And it is still in Beta, so there’s stuff in the pipeline, including documentation, no doubt. The idea of providing diverse maps online, and allowing users to combine them in fancy ways in support of decision-making, is certainly a great one. I really hope to see the promise of RTBMaps fulfilled.
Is this automated Musa phylogeny any good?
PhyloGenerator is “an open-source, stand-alone Python program, that makes use of pre-existing sequence data and taxonomic information to largely automate the estimation of phylogenies.” Sounds intriguing, no? I found out about it via this Twitter exchange with Rich Grenyer:
@rich_ @Phalaropus Sure, of course!
— AgroBioDiverse (@AgroBioDiverse) July 11, 2013
He very kindly shared his automatically generated Musa phylogeny, which is reproduced below. I’m afraid you’ll have to click on the image to read the species names.
So now I’m reaching out to all you banana taxonomists out there. Does this make any sense?
Nibbles: Brazil nut, PVP, Dog evolution, Plant Treaty in India, Kerala veggies, Rust tracking latest, Adapt or die, Quinoa latest, NZ seed exchange, African soybeans, Ancient aquaculture
- The Brazil nut needs its pollinators.
- How USDA protects plant varieties.
- American dogs are Asian, not European.
IndiaNepal working out how to implement the ITPGRFA.- Kerala’s vegetable terrace gardeners.
- Haven’t heard much about Ug99 lately, have we? Doesn’t mean people aren’t keeping a careful eye on it.
- Climate change 10,000 times faster than vertebrate evolution.
- Why quinoa is not “taking over the world.”
- Not even New Zealand. Though not for want of trying.
- In the meantime, soybeans taking over Africa?
- Aquaculture that’s sustainable and ancient. Includes taro fish ponds, which for some reason seem to me cool beyond measure.




