We have received sad news of a fire at the national genebank in the Philippines, the same one which featured in the news item we nibbled yesterday about the much-needed refurbishments it is undergoing. More details as we get them. If you have any information, let us know.
Nibbles: AnGR genomic resources, Agroforestry fund, US climate map, Cassava rules
- Big new project on farm animal genomics. Gene-jockeys lick lips.
- Big new push to raise money for the Moringa Fund. Agroforesters lick lips.
- Big new hardiness zone map unleashed by USDA on unsuspecting world. American GIS people and gardeners lick lips.
- Bill Gates mentions cassava. CIAT licks lips.
How long does it really take to do mutation breeding?
Thanks to Nigel for pointing us towards the 24 January edition of the BBC radio programme Farming Today, which had a short segment on mutation breeding. It may not be online for long, and may not be available to all, so here’s a transcript of the relevant bit, which Nigel got from Defra.
Anna Hill: It’s been called a technological revolution which will change the way the world’s crops are grown. We find out how genetic mutation works later in the programme.
(Break)
AH: The UK is leading a revolution in the race to breed new plants as quickly as possible. Scientists at the Sainsbury laboratory in Norwich have developed a new technique which could help farmers in Japan where last year’s tsunami flooded land with sea water leaving such high salt levels that few crops could grow.
Well now the researchers have worked out a high speed way to identify the genes which are resistant to growing in salty soil to breed a new variety of rice within two years.
Dr Brande Wulff explained how important this is for the world’s crops.
Dr Brande Wulff (Sainsbury Laboratory, Norwich): Well this is a huge leap forward. Traditionally it would have been a, a marathon of five years or so to do this type of work or possibly even a long distance endurance event of ten years or so. Now we’ve reduced that to a short sprint of one or two years. So it’s, time is in, is the essence in this type of work and so it’s really a huge leap forward.
AH: How does the process work?
BW: It’s extremely simple. In this case with rice you take your favourite cultivar of rice or variety of rice. You then mutate that. When you introduce mutations you introduce bad ones and good ones and that happens randomly and the challenge is then to take those good mutations and anchor them in your favourite variety and get rid of the bad ones. And that’s done by, by crossing the mutant plant back to the parental variety, the non mutated parent, and then in the progeny you select for the ones that have your desired trait. And so you, you can get rid of the bad mutations in this way.
And then you sequence those plants, you put on your DNA goggles which allows you to look at the sequence and then you pinpoint those mutations or genetic variants that confer the new trait that you’re interested in. So genetic variation takes, it, it’s occurring the whole time naturally, but what the scientist does, he speeds that up in the lab using a chemical mutagen or, or something like that.
AH: Which is not GM.
BW: It’s not GM in, in the sense that we’re, we’re not transforming the plant, we’re not introducing a novel DNA from outside of the plant.
AH: Now the work that’s being done at the moment is looking at salt resistance in rice because in Japan the tsunami contaminated soil with a lot of salt. So how long would it be do you think before Japanese farmers would actually see a new variety of rice to plant which is resistant?
BW: It’s perhaps only a matter of a year or so before they can clean up these plants and then bulk up enough seed so that they can distribute it to farmers.
AH: That’s very, very fast isn’t it?
BW: It is indeed, yes.
AH: So could this be applied to other plants then?
BW: Well really the sky is the limit. This technique requires that you have a good genome sequence of the plant that you’re working on, which we have for rice. We don’t have that yet for wheat, but we do have it for a lot of other crops including very important crops like soy bean, cassava, potato, grape, even oranges and, and apples have been sequenced.
AH: Dr Brande Wulff from the Sainsbury Lab and do join us again tomorrow.
Dr Wulff clearly has a way with words. I particularly liked his reference to DNA goggles. And he understands journalists. But I took the liberty of running said words by a friend of mine who used to work on mutation breeding at the IAEA. He was considerably less sanguine.
A healthy dose of skepticism, re. the timeframe of one or two years to get stable mutants — to be introduced into breeding programs — wouldn’t hurt. Salinity tolerance is a very complex multigenic trait; getting all the mutation events — and their interactions — to confer the desired level of tolerance is quite a tall order. The back crosses to clean out the unintended deleterious effects of induced mutations (breaking the linkage drags), even with MABC, takes time also.
One to keep an eye on.
Genebanks forgotten, again
Bill Gates highlights his family Foundation’s work on cassava viruses in his latest letter. We have on occasion wondered here why the CGIAR didn’t make more of its work on that subject.
But anyway. I really wanted to rue a different lost opportunity here.
Historically, increasing the productivity of a crop meant finding two seed variants, each with some desirable and undesirable characteristics, and crossing them until you get a combination with mostly the good characteristics of the two parents. This required actually growing tens of thousands of plants to see how they develop in different growing conditions over time—for example, when water is plentiful and when it is not. Now the process is quite different. Imagine the analogy of a large public library with rooms full of books. We used to have to use the card catalogue and browse through the books to find the information we needed. Now we know the precise page that contains the piece of information we need. In the same way, we can find out precisely which plant contains what gene conferring a specific characteristic. This will make plant breeding happen at a much faster clip.
Would it have killed him to slip in some recognition of the genebanks where all those “books” are so painstakingly and expensively kept?
Nibbles: Canis then and now, Training roundup, Soybean genome, Top 10 viruses, PNG drought, Food archaeology, Sturgeon Bay, Moringa
- Dogs were first domesticated animal. But the love affair is cooling off, at least for some breeds.
- Building capacity for animal genetic resources use, and for conservation and sustainable use under the ITPGRFA. And tree domestication. Is someone keeping track?
- BGI continues to take over DNA world.
- And the Worst Plant Virus Oscar goes to…
- How PNG farmers cope with drought. From what is developing into a really useful blog.
- I wish I had time to read 200 pages on ancient Athenian food. But maybe you do?
- Learn about the USDA potato collection, including lots of wild relatives.
- The tree that thinks it’s a supermarket: Moringa in the limelight again.