Climate change – Agricultural Biodiversity Weblog

April 18, 2018April 19, 2018

A Nibble big enough to choke on

Yeah, yeah, it’s been quiet here for the best part of a month. Work, you know. When you notice lack of action here, though, that doesn’t mean that I’m being completely idle. Not always, anyway. Check on Twitter and Facebook, if you dare, and you’ll see new stuff on a fairly regular basis, because that’s easier to do than a fully-fledged blog post. Anyway, what I’ll do here is a mega-Nibble hoovering up snippets from the past few weeks that I posted on social media but not here.

Vegetable History 101.
If you have a heirloom of one of the above to name, try this neural network approach.
Just as long as the name doesn’t end up being racist.
It’s too late for some German veggies. Though not, it seems, for German forests. What’s the difference?
Not yet too late for Tanzanian wild veggies, but winter is coming. Maybe giving them cool names would help.
And for some North American indigenous crops too, thanks to some committed people.
And for beans in Mexico for that matter.
Why all the above is important.
And urgent.
And this is the resulting problem if you ignore that lesson.
You see, the Australians are on the case, with their bush tucker fixation.
Mind you, it’s not all sweetness and light: the quinoa bubble bursts.
Maybe we can make a game of this diversification lark. Oh, look, it seems we can.
You can even breed for it.
Wherein I pontificate about genebank data. Again.
Maybe these guys will listen?
These guys obviously did, and built a better peanut.
Yeah, but can you see them from space?
The cost of ending hunger. The cost of ensuring crop diversity conservation in genebanks seems, well, peanuts.
The archaeology of gardens. Two of my favourite topics, combined. If only there was beer too. And peanuts.
A banana is a banana is a banana. Not.
All those bananas? You can help to map them.
They’ll put them on Google Earth next, like Kew did for these beautiful natural areas, with all their crop wild relatives :)
A Japanese agricultural encyclopaedia. Illustrated to boot.
Or, for the more Euro-centric, food art at the Met…
This cheese should probably be at the Met there too.
And this weed strain may well soon be on sale in the gift shop.
The sweet potato made it to Oceania on its own.
Oh no it didn’t.
On the other hand, livestock generally need to be accompanied.
All the yeast belong China.

April 9, 2018April 9, 2018

Brainfood: Vine breeding, Moroccan veggie erosion, Potato charisma, Pigeonpea diversity, Dietary diversity, Cannabis breeding, Cattle domestication, Late blight gene

Vitis vinifera L. fruit diversity to breed varieties anticipating climate changes. Nice, but isn’t this leaving it rather late?
The Deterioration of Morocco’s Vegetable Crop Genetic Diversity: An Analysis of the Souss-Massa Region. 80-90% loss in 30 years.
Interspecies Respect and Potato Conservation in the Peruvian Cradle of Domestication. Some varieties have more charisma than others.
Quantitative Analysis, Distribution and Traditional Management of Pigeon Pea [Cajanus Cajan (L.) Millsp.] Landraces’ Diversity in Southern Benin. Larger farms have slightly more varieties, otherwise difficult to find socioeconomic correlates of diversity; main criterion for choosing varieties is market value.
Higher agrobiodiversity is associated with improved dietary diversity, but not child anthropometric status, of Mayan Achí people of Guatemala. Diversifying diets won’t help without better toilets.
Dwarf germplasm: the key to giant Cannabis hempseed and cannabinoid crops. The mainstreaming of weed continues. The Man unavailable for comment.
Early North African Cattle Domestication and Its Ecological Setting: A Reassessment. No early North African cattle domestication after all?
Identification and rapid mapping of a gene conferring broad-spectrum late blight resistance in the diploid potato species Solanum verrucosum through DNA capture technologies. From Mexico with love.

April 3, 2018April 3, 2018

Brainfood: Rice stress maps, Saline rice, Forage millet, Diversification, Deforestation & diets, CC impacts, Elite cassava, Indian quarantine, Chinese urban ag, Squash diversity, Tomato minerals, Hidden hunger

Mapping abiotic stresses for rice in Africa: Drought, cold, iron toxicity, salinity and sodicity. Now to mash this up with germplasm provenance information…
Screening of rice landraces (Oryza sativa L.) for seedling stage salinity tolerance using morpho-physiological and molecular markers. …you know, so that this sort of thing could be predicted, perhaps.
Identification of promising sources for fodder traits in the world collection of pearl millet at the ICRISAT genebank. 14 out of 326. Difficult to predict from environmental data, though, I suspect.
Agricultural diversification as an important strategy for achieving food security in Africa. More diverse households and farming systems are more food secure, but only up to a point, and it depends on various factors. 43% of African cropland will be difficult to diversify.
Deforestation and child diet diversity: A geospatial analysis of 15 Sub-Saharan African countries. Deforestation is bad for diet diversity. No word on overlap with the above mentioned 43%.
Two-thirds of global cropland area impacted by climate oscillations. I bet you that includes most of the above-mentioned 43%.
Exchanging and managing in-vitro elite germplasm to combat Cassava Brown Streak Disease (CBSD) and Cassava Mosaic Disease (CMD) in Eastern and Southern Africa. The devil is in the logistics.
Risk of pathogens associated with plant germplasm imported into India from various countries. See what I mean?
An exploration of the implication and feasibility of UAH (Urban Agricultural Heritages) in China. I for one really want to see the Xuanhua traditional vineyard system.
Genetic Resources in the “Calabaza Pipiana” Squash (Cucurbita argyrosperma) in Mexico: Genetic Diversity, Genetic Differentiation and Distribution Models. Balsas-Jalisco is a potential center of domestication. Isn’t it the same for maize?
Genetic differences in macro-element mineral concentrations among 52 historically important tomato varieties. Fairly strong and mostly independent, except for K and Mg.
The global burden of chronic and hidden hunger: Trends and determinants. Growth not as good on hidden hunger as on chronic. Let them eat tomatoes.

March 19, 2018March 24, 2018

Brainfood: Tunisian carrots, Benin & CC, Tree variation, Grape phenotyping, Small ruminant domestication, Rio herbarium, Barley domestication, Millet groupings, Greek cheese

Genotyping-by-sequencing reveals the origin of the Tunisian relatives of cultivated carrot (Daucus carota). D. carota subsp. gummifer is different.
Impacts of climate change on cropping patterns in a tropical, sub-humid watershed. Recent advances in both rainfed and irrigated cropping in central Benin will be undone. Genetics to the rescue?
Is local trait variation related to total range size of tropical trees? No.
High-Precision Phenotyping of Grape Bunch Architecture Using Fast 3D Sensor and Automation. Next, put it on a drone.
Convergent genomic signatures of domestication in sheep and goats. Same genes, different selection pressures.
Herbarium collection of the Rio de Janeiro Botanical Garden (RB), Brazil. Any crops wild relatives? Pretty sure there must be.
Targeted resequencing reveals genomic signatures of barley domestication. Distinct ancestor populations at eastern and western ends of the Fertile Crescent implicated in domestication.
Towards Defining Heterotic Gene Pools in Pearl Millet [Pennisetum glaucum (L.) R.Br.]. Hybrid pearl millet is just around the corner.
Biodiversity and microbial resistance of lactobacilli isolated from the traditional Greek cheese kopanisti. Impressive biodiversity, alarming resistance.

March 12, 2018March 9, 2018

Brainfood: Core collections, Food system sustainability, Sunflower breeding, Modern/traditional mosaic, Nepal earthquake response, Modelling erosion, Folate in potato, Argentinian andigena, Millet evaluation, Pigeonpea evaluation, Sugarcane evaluation, Bean drought genes, Threatened trees

An informational view of accession rarity and allele specificity in germplasm banks for management and conservation. Basically a better way of making cores.
Multi-indicator sustainability assessment of global food systems. Thankfully includes both “Shannon Diversity of Food Supply” and “Food Production Diversity”. No sign of the Agrobiodiversity Index, though, alas.
Cytoplasmic Diversity Studies in Sunflower (Helianthus annuus L.): A Review. Have the wild relatives to thank for it.
Mosaic of Traditional and Modern Agriculture Systems for Enhancing Resilience. Refers specifically to rice irrigation systems, but could be generalizable, why not?
Post-disaster agricultural transitions in Nepal. To cardamon, mainly.
Simulating the Impacts of Climate Variability and Change on Crop Varietal Diversity in Mali (West-Africa) Using Agent-Based Modeling Approach. Less favourable and unstable climatic conditions lead to loss of diversity.
Genetic Diversity in Argentine Andean Potatoes by Means of Functional Markers. There’s a small group of weird, interesting ones.
Single Nucleotide Polymorphism (SNP) markers associated with high folate content in wild potato species. Ten-fold variation in content in in F2 population derived from cross between high folate diploid clone of wild Solanum boliviense and low/medium folate diploid S. tuberosum. Nice.
Identification of new sources of resistance for pearl millet downy mildew disease under field conditions. 20 really good ones out of 101. Could have been worse.
Assay of Genetic Architecture for Identification of Waterlogging Tolerant Pigeonpea Germplasm. 38 out of 128 survived. People are lucky this week.
Phenotypic evaluation of a diversity panel selected from the world collection of sugarcane (Saccharum spp) and related grasses. Out of 300, 27 were higher than commercial standards in dry or fresh mass. On a roll here.
Genotyping by Sequencing and Genome–Environment Associations in Wild Common Bean Predict Widespread Divergent Adaptation to Drought. Two genes identified. Let’s quit while we’re ahead. No, come on, let’s do another one.
Tree genetic resources at risk in South America: A spatial threat assessment to prioritize populations for conservation. 7 of 80 socieconomically important trees threatened across their range. Damn.

Yeah, yeah, it’s been quiet here for the best part of a month. Work, you know. When you notice lack of action here, though, that doesn’t mean that I’m being completely idle. Not always, anyway. Check on Twitter and Facebook, if you dare, and you’ll see new stuff on a fairly regular basis, because that’s easier to do than a fully-fledged blog post. Anyway, what I’ll do here is a mega-Nibble hoovering up snippets from the past few weeks that I posted on social media but not here.
- Vegetable History 101.
- If you have a heirloom of one of the above to name, try this neural network approach.
- Just as long as the name doesn’t end up being racist.
- It’s too late for some German veggies. Though not, it seems, for German forests. What’s the difference?
- Not yet too late for Tanzanian wild veggies, but winter is coming. Maybe giving them cool names would help.
- And for some North American indigenous crops too, thanks to some committed people.
- And for beans in Mexico for that matter.
- Why all the above is important.
- And urgent.
- And this is the resulting problem if you ignore that lesson.
- You see, the Australians are on the case, with their bush tucker fixation.
- Mind you, it’s not all sweetness and light: the quinoa bubble bursts.
- Maybe we can make a game of this diversification lark. Oh, look, it seems we can.
- You can even breed for it.
- Wherein I pontificate about genebank data. Again.
- Maybe these guys will listen?
- These guys obviously did, and built a better peanut.
- Yeah, but can you see them from space?
- The cost of ending hunger. The cost of ensuring crop diversity conservation in genebanks seems, well, peanuts.
- The archaeology of gardens. Two of my favourite topics, combined. If only there was beer too. And peanuts.
- A banana is a banana is a banana. Not.
- All those bananas? You can help to map them.
- They’ll put them on Google Earth next, like Kew did for these beautiful natural areas, with all their crop wild relatives :)
- A Japanese agricultural encyclopaedia. Illustrated to boot.
- Or, for the more Euro-centric, food art at the Met…
- This cheese should probably be at the Met there too.
- And this weed strain may well soon be on sale in the gift shop.
- The sweet potato made it to Oceania on its own.
- Oh no it didn’t.
- On the other hand, livestock generally need to be accompanied.
- All the yeast belong China.
Published on April 18, 2018