- Genetic variability of two Italian indigenous chicken breeds inferred from microsatellite marker analysis. Two Piedmontese breeds are closer to British breeds than other Italian or continental chickens. And poorly managed to boot.
- Genome of plant maca (Lepidium meyenii) illuminates genomic basis for high altitude adaptation in the central Andes. It’s the whole genome duplications, stupid.
- Rationalizing the GMO Debate: The Ordonomic Approach to Addressing Agricultural Myths. Yeah that’ll work.
- Factors and determinants of animal genetic resources management activities across the world. Capacity, says fancy maths.
- Accumulation of Genetic Diversity in the US Potato Genebank. The collection may need to double.
- Structure, function and management of semi-natural habitats for conservation biological control: A review of European studies. There is plenty of information on natural enemies in natural habitats (though not in woodlands, surprisingly), but not much on whether they make it to adjacent fields and actually have an effect on pests.
- Prospects of the use of wild relatives for pea breeding. More work needed. Starting with translating this thing from the Russian.
- Genetic Diversity Analysis Reveals Importance of Green Revolution Gene (Sd1 Locus) for Drought Tolerance in Rice. Back to the landraces.
SOTWP Day 1: Climate change, protected areas and extinction risk
In which our friend Nora Castañeda summarizes the first day of the State of the World’s Plants Symposium.
The first day of the Kew symposium was divided in three sessions: climate change, protected areas and extinction risk.
Dr Kay Havens from the Chicago Botanic Gardens opened the first session, presenting some of the responses that plants may display to climate change, such as: plasticity, adaptation and migration. Dr Havens recommended gathering seeds from the fringes of environmental niches, as a strategy to obtain useful adaptations to rapid climate change.
Following this, Dr Alistair Seddon presented his work on the relative response of ecosystems to climate variability. Prof. Sandra Díaz then described the major plant traits (and their combinations) that are currently dominant among plants. This is useful for vegetation and ecosystem modelling. Closing the climate change section, Prof. Yadvinder Malhi presented his research on the impacts of climate change on tropical forests. Did you know that logging can have a similar effect as climate change. You can find a comprehensive summary of Prof. Malhi’s research online.
Dr Iain Darbyshire opened the session on protected areas with his work on Tropical Important Plant Areas, followed by Lize von Staden and the technical approach that the South African National Biodiversity Institute is successfully using to establish in situ conservation priorities. Prof. William Laurance shared some of the considerations that should be taken into account for conserving plant diversity in natural reserves, including where roads and infrastructure should be built, the effectiveness of protected areas to meet their conservation objectives and the importance of connectivity between protected areas in the tropics. He introduced us to PADDDtracker:
We think of national parks and protected areas as permanent fixtures on the landscape, but recent research points to the widespread (but largely overlooked) protected area downgrading, downsizing, and degazettement (PADDD). In response, PADDDtracker.org is documenting the patterns, trends, causes, and consequences of PADDD. PADDDtracker.org allows you to learn about PADDD and share your experiences with the world: where has PADDD already happened? Where has PADDD been proposed? Why is PADDD happening?
The session closed with Diego Juffe-Bignoli from UNEP-WCMC discussing the contributions of protected areas to meeting international biodiversity targets (Aichi, GSPC and SDG).
For the extinction risk session, Prof. Quentin Cronk introduced the term “living dead” to describe those beautiful, large but lonely trees that are often seen in the middle of pastures (common in recently deforested regions). Living outside of their preferred ecological conditions and displaying no regeneration, they have little chance of long-term survival. Prof. Cronk was followed by Prof. David Richardson, who talked about the impacts of invasive plant species on native plant populations.
Then, Steve Bachman, one of the brains behind the Sampled Red List Index for Plants, presented current and future plans for continuing Red Listing plants, current advances in uploading assessments to the IUCN RedList, the need to increase the availability of data for assessing biodiversity threats, and approaches to improving the quality of data derived from citizen science. Prof. Vololoniaina Jeannoda closed the day with her presentation of the ongoing efforts to conserve the oviala — also known as the yams of the forest — in Madagascar. That’s crop wild relatives: more on that on day 2, as you’ll soon see.
Brainfood: Banana GWAS, Yeast genebanks, Hybrid sorghum, How to intensify ecologically, Med pastures, Food services, Neolithic transition, Ploughing the savanna
- A Genome-Wide Association Study on the Seedless Phenotype in Banana (Musa spp.) Reveals the Potential of a Selected Panel to Detect Candidate Genes in a Vegetatively Propagated Crop. One strong candidate gene, from 6 possible regions. And here’s the light version.
- Yeast culture collections in the twenty-first century: New opportunities and challenges. Pretty much the same as plant genebanks.
- Genetic variation in sorghum as revealed by phenotypic and SSR markers: implications for combining ability and heterosis for grain yield. Possible parents for hybrids identified.
- Actionable knowledge for ecological intensification of agriculture. Look at the landscape, articulate trade-offs and don’t forget the social dynamics.
- Taxonomic and functional diversity in Mediterranean pastures: Insights on the biodiversity–productivity trade-off. Somebody mention trade-offs?
- Are the major imperatives of food security missing in ecosystem services research? Pretty much.
- Reproductive trade-offs in extant hunter-gatherers suggest adaptive mechanism for the Neolithic expansion. Agriculture got you laid, but then killed you.
- High carbon and biodiversity costs from converting Africa’s wet savannahs to cropland. Bad idea all round.
Brainfood: Sesame diversity, Teff & drought, Semen bank, Forest genomic monitoring, Sahiwal cattle status, Genomic prediction, Ecuadorian homegardens, Spinach association mapping, ICRISAT pigeonpea & pearl millet, Women & milpa, African rice at AfricaRice, Bacteria helping wheat
- Analysis of Genetic Diversity and Population Structure of Sesame Accessions from Africa and Asia as Major Centers of Its Cultivation. Strong geographic structure, and more diversity in Asia than Africa.
- Performance of Tef [Eragrostis tef (Zucc.) Trotter] Genotypes for Yield and Yield Components Under Drought-Stressed and Non-Stressed Conditions. Out of 144 genotypes, 15 were good in ideal conditions, 8 under stress, and none, alas, in both cases.
- Genome resource banks pay conservation dividends. Banked semen from “genetically valuable” individuals used to slightly raise diversity in captive populations. Of black-footed ferrets.
- Conservation and Monitoring of Tree Genetic Resources in Temperate Forests. Theory.
- Logging by selective extraction of best trees: Does it change patterns of genetic diversity? The case of Nothofagus pumilio. Praxis: maybe.
- Population structure and demographic trends of the registered Sahiwal cattle in Kenya. It’s losing diversity, so Something Must Be Done.
- Genomic Prediction of Gene Bank Wheat Landraces. It’s not perfect, but not bad either.
- Plant diversity and ecosystem services in Amazonian homegardens of Ecuador. Ethnicity is the stongest determinant of floristic composition.
- Association mapping of leaf traits in spinach (Spinacia oleracea L.). “Five, seven and 14 SNPs were identified to be associated with surface texture, edge shape and petiole colour, respectively.”
- Pre-breeding to expand primary genepool through introgression of genes from wild Cajanus species for pigeonpea improvement. Even the tertiary genepool is interesting.
- Characterization and genetic potential of African pearl millet named landraces conserved at the ICRISAT genebank. 5 agronomic clusters, each with good stuff, but different good stuff.
- The participation of farm women in the milpa system of the Yucatán, Mexico. …is minimal.
- Screening African rice (Oryza glaberrima) for tolerance to abiotic stresses: I. Fe toxicity. 3 out of 2000!
- Alleviation of salt stress by halotolerant and halophilic plant growth-promoting bacteria in wheat (Triticum aestivum). Not by a huge amount. For one wheat variety. In hydroponics.
Nibbles: Bears loose cherry, Swiss cheese birth, Aussie genebank, Palestinian genebank, Wine genebank, Mexican maize, Beer in Israel & Germany
- Bears shit wild cherry seeds in the woods. But uphill.
- The origins of Swiss cheese. And I mean WAY back.
- The Australian Grains Genebank in the news. Well deserved too.
- Likewise the new Palestinian genebank.
- And the Bourgogne grapevine genebank too, since we’re at it.
- Saving popcorn.
- Jesus’ beer recreated. But would it pass the German purity law?