- Genomic estimation of complex traits reveals ancient maize adaptation to temperate North America. “The diversity needed for high altitudes was there, but getting it in the right combination took 2,000 years,” says ancient maize DNA.
- The deep human prehistory of global tropical forests and its relevance for modern conservation. There were “garden cities” in the tropical forests of equatorial Africa, South Asia, and Southeast Asia starting 45,000 years ago.
- An Introduction to Social Media for Scientists. Choose wisely.
- Is there an optimum level of diversity in utilization of genetic resources? It depends.
Brainfood: Soybean wild relatives, Durum diversity double, Intensifying livestock, Organic soil, Fodder millet, Brachiaria phylogeny, Use bottlenecks, Another spud, Sclerotinia stem rot, Canola resynthesized
- Characterizing the allopolyploid species among the wild relatives of soybean: Utility of reduced representation genotyping methodologies. Allopolyploids are more than the sum of their diploid progenitors, but also less.
- Genetic Diversity within a Global Panel of Durum Wheat (Triticum durum) Landraces and Modern Germplasm Reveals the History of Alleles Exchange. Modern varieties have a lot of rare alleles, and Ethiopian landraces may be the results of a separate domestication. But I’m not sure you can call this a core collection. Incidentally, genotyped by 35K Affymetrix Axiom wheat breeders array1 at TraitGenetics (Gatersleben, Germany).
- Genome Wide Association Study to Identify the Genetic Base of Smallholder Farmer Preferences of Durum Wheat Traits. Farmers know what they’re talking about. No word on any overlap with above. Incidentally, genotyped on the Infinium 90K wheat chip at TraitGenetics (Gatersleben, Germany). There’s a coincidence!
- The role of livestock intensification and landscape structure in maintaining tropical biodiversity. If we want to keep more livestock while maintaining biodiversity, we should spare forests and avoid using agrochemical inputs. Assuming that dung beetles can stand in for tropical biodiversity as a whole.
- Organic farming enhances soil microbial abundance and activity — A meta-analysis and meta-regression. Especially legumes in crop rotations and organic inputs.
- Identification of promising sources for fodder traits in the world collection of pearl millet at the ICRISAT genebank. From over 300 to about a dozen.
- Genetic Diversity and Population Structure of Brachiaria Species and Breeding Populations. Fancy molecular markers agree with morphology.
- Bottlenecks in the PGRFA use system: stakeholders’ perspectives. Need better policies, capacity and access.
- Solanum jamesii: Evidence for Cultivation of Wild Potato Tubers by Ancestral Puebloan Groups. But does it make good chips?
- Resistance to Sclerotinia sclerotiorum in wild Brassica species and the importance of Sclerotinia subarctica as a Brassica pathogen. Thanks to the U. of Warwick genebank.
- Genetic changes in a novel breeding population of Brassica napus synthesized from hundreds of crosses between B. rapa and B. carinata. Any of them resistant to Sclerotinia?
Domesticating horsegram
The indefatigable Dorian Fuller has been even less fatigable than usual lately, with a couple of papers in the past few weeks on the history of the horsegram, Macrotyloma uniflorum. The first is a general review of the geographical, linguistic and archaeological evidence for the origins of the crop. They point to a long history in India and at least two separate domestications there.
The second is a much deeper dive into the history of domestication, using high resolution x-ray computed tomography with a synchrotron to measure non-destructively the decrease in seed coat thickness with time in archaeological remains of domesticated material. A thin seed coat is thought to be related to loss of dormancy, and hence part of the domestication syndrome. It had been suggested that rare non-dormant variants might have been selected during domestication, but the evidence from horsegram is that even the thick-coated, and therefore presumably still dormant, material was domesticated.
Which is all very interesting, but what I want to leave you with is a little quiz. Given that Kersting’s groundnut is now also in Macrotyloma, as M. geocarpum (Harms) Maréchal & Baudet, how many other con-generic species can you think of that were domesticated on separate continents? Apart from the two Oryza species, of course.
Brainfood: African tea, Iranian olives, Persistent identifiers, Fast breeding, Lablab domestication, Pea origin, Celebs & conservation, Ancient dope, Sugarcane evolution, Chicken selection
- Multiple origins and a narrow genepool characterise the African tea germplasm: concordant patterns revealed by nuclear and plastid DNA markers. It’s a “potpourri,” but kinda missing Chinese Assam stuff.
- The eastern part of the Fertile Crescent concealed an unexpected route of olive (Olea europaea L.) differentiation. It was in Iran before domestication.
- Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data. Why DOIs succeeded, and why something like them needs to be applied to biological specimens, including genebank accessions, to combat “desultory citation practices”. But we knew that.
- Speed breeding: a powerful tool to accelerate crop research and breeding. Can double the number of generations per unit time with fully-enclosed controlled-environment growth chambers.
- Evidence for two domestication events of hyacinth bean (Lablab purpureus (L.) Sweet): a comparative analysis of population genetic data. With the 2-seeded group domesticated in Ethiopia, the 4-seeded somewhere else in Africa.
- Refinement of the collection of wild peas (Pisum L.) and search for the area of pea domestication with a deletion in the plastidic psbA-trnH spacer. Maybe not Turkey.
- The effectiveness of celebrities in conservation marketing. Use carefully, and evaluate.
- Cannabis in Eurasia: origin of human use and Bronze Age trans-continental connections. Proto-Indo-Europeans were real stoners.
- Analysis of Three Sugarcane Homo/Homeologous Regions Suggests Independent Polyploidization Events of Saccharum officinarum and Saccharum spontaneum. It’s really complicated, not least because of plant breeders.
- Genomic Comparison of Indigenous African and Northern European Chickens Reveals Putative Mechanisms of Stress Tolerance Related to Environmental Selection Pressure. African chickens able to withstand high temperatures due to a region on chromosome 27 and European chickens low temperatures due to region on chromosome 2.
Nibbles: Visionary edition
- New guy in charge Peter Wenzl gives us his vision for the CIAT genebank.
- Agriculture and Irrigation Minister of Peru gives us his vision for the Peruvian genebank.
- CIMMYT’s annual report gives us a vision of conserving maize in Guatemala.
- Farmer Somashekhara gives us his vision for finger millet farming in India. And two makes a trend…
- Retired agriculture expert Malcolm Hazelman gives us his vision for Samoan gardens.
- A Tagorean vision of radical relocalization involving perennial edimentals.
- Lots of people give us their vision for saving the wild apple.
- IFPRI gives us their vision for the future of food in a changing world. With infographic goodness.
- Natalie Mueller et al. give us their vision for reviving the forgotten crops of the Eastern Agricultural Complex.
- A vision of a planet protected in situ, in multiple ways. Yes, even pigeons. And yes, even cities, though agrobiodiversity neglected as usual.
- A vision of permanent identifiers everywhere.
- DNA gives us a vision of domestication explained. Yes, even sugarcane.