- Assessment of Genetic Diversity and Population Structure in a Global Reference Collection of 531 Accessions of Carthamus tinctorius L. (Safflower) Using AFLP Markers. Bayesian analysis of genetic diversity of global (43 countries) collection held in India reveals 19 geographic groups, with most diversity in the Near East and Iran–Afghanistan regions.
- Molecular evaluation of orphan Afghan common wheat (Triticum aestivum L.) landraces collected by Dr. Kihara using single nucleotide polymorphic markers. Analysis (Bayesian, natch) of genetic diversity of over 400 wheat landraces collected 1950-1970 and conserved at the Kihara Institute for Biological Research, Japan reveals agroecological patterning and hotspot in Badakhshan province.
- Sources of pest resistance in cassava. Analysis of 89 trials over 25 years involving the CIAT cassava collection identifies 129 landraces with high resistance to thrips, 33 to green mites and 19 to whiteflies.
- Screening sweetpotato genotypes for tolerance to drought stress. Days to permanent wilting point (DPWP) points to 8 promising clones in Kenya.
- Olive domestication and diversification in the Mediterranean Basin. About 400 wild and cultivated accessions divide up into W, central and E groups and show evidence of admixture among them and local domestication events.
- The Multiple Functions and Services of Community Seedbanks. More than just conservation.
- Diversification practices reduce organic to conventional yield gap. More data and fancier maths finds a lower organic yield gap (20%), which is halved by multi-cropping and crop rotations.
- Conserving landraces and improving livelihoods: how to assess the success of on farm conservation projects? All you need is two graphs.
- Finding Our Way through Phenotypes. “We urge all biologists, data managers, and clinicians to actively support the development, evaluation, refinement, and adoption of methodologies, tools, syntaxes, and standards for capturing and computing over phenotypic data and to collaborate in bringing about a coordinated approach.” Amen.
- Wild food in Europe: A synthesis of knowledge and data of terrestrial wild food as an ecosystem service. 65 million people collect, and at least 100 million consume, wild food. But only 81 plants? Thought it would be more. But even so, quite an ecosystem service.
Global Forest Genetic Resources: Taking Stock
December saw the publication of a special, open access issue of Forest Ecology and Management on “Global Forest Genetic Resources: Taking Stock.” Ian Dawson, one of the editors, has blogged chez nous about a couple of the papers. Here is the full table of contents, with links to both the papers and Ian’s posts.
Loo J, Souvannavong O, Dawson IK (2014) Seeing the trees as well as the forest: the importance of managing forest genetic resources. Forest Ecology and Management, 333, 1-8.
http://dx.doi.org/10.1016/j.foreco.2014.08.014
Dawson IK, Leakey R, Clement CR, Weber JC, Cornelius JP, Roshetko JM, Vinceti B, Kalinganire A, Tchoundjeu Z, Masters E, Jamnadass R (2014) The management of tree genetic resources and the livelihoods of rural communities in the tropics: non-timber forest products, smallholder agroforestry practices and tree commodity crops. Forest Ecology and Management, 333, 9-21.
http://dx.doi.org/10.1016/j.foreco.2014.01.021
Koskela J, Vinceti B, Dvorak W, Bush D, Dawson IK, Loo J, Kjaer ED, Navarro C, Padolina C, Bordács S, Jamnadass R, Graudal L, Ramamonjisoa L (2014) Utilization and transfer of forest genetic resources: a global review. Forest Ecology and Management, 333, 22-34.
http://dx.doi.org/10.1016/j.foreco.2014.07.017
Graudal L, Aravanopoulos F, Bennadji Z, Changtragoon S, Fady B, Kjær ED, Loo J, Ramamonjisoa L, Vendramin GG (2014) Global to local genetic diversity indicators of evolutionary potential in tree species within and outside forests. Forest Ecology and Management, 333, 35-51.
http://dx.doi.org/10.1016/j.foreco.2014.05.002
Wickneswari R, Rajora OP, Finkeldey R, Aravanopoulos F, Bouvet J-M, Vaillancourt RE, Kanashiro M, Fady B, Tomita M, Vinson C (2014) Genetic effects of forest management practices: global synthesis and perspectives. Forest Ecology and Management, 333, 52-65.
http://dx.doi.org/10.1016/j.foreco.2014.06.008
Thomas E, Jalonen R, Loo J, Boshier D, Gallo L, Cavers S, Bordács S, Smith P, Bozzano M (2014) Genetic considerations in ecosystem restoration using native tree species. Forest Ecology and Management, 333, 66-75.
http://dx.doi.org/10.1016/j.foreco.2014.07.015
Alfaro RI, Fady B, Vendramin GG, Dawson IK, Fleming RA, Sáenz-Romero C, Lindig-Cisneros RA, Murdock T, Vinceti B, Navarro CM, Skrøppa T, Baldinelli G, El-Kassaby YA, Loo J (2014) The role of forest genetic resources in responding to biotic and abiotic factors in the context of anthropogenic climate change. Forest Ecology and Management, 333, 76-87.
http://dx.doi.org/10.1016/j.foreco.2014.04.006
Pritchard HW, Moat JF, Ferraz JBS, Marks TR, Camargo JLC, Nadarajan J, Ferraz IDK (2014) Innovative approaches to the preservation of forest trees. Forest Ecology and Management, 333, 88-98.
http://dx.doi.org/10.1016/j.foreco.2014.08.012
I wonder how many of the recently-published top 20 research questions on forestry and landscapes we can now tick off.
Nibbles: Sake worries, Idaho apples, Local cuisine, SP leaves, Baobab superfood, CWR training, Physic gardens, Forest questions
- As if Japan doesn’t have enough to worry about, its sake is in trouble.
- Update on that Idaho Heritage Tree Project.
- Why local cuisine is best. Who needs fusion, eh?
- Sweet potato leaves are good, and good for you. But you can’t eat them if they’re not part of your local cuisine.
- Same goes for baobab.
- New Samara has report on crop wild relatives training in Uganda.
- A medicinal plant garden in Philadelphia.
- How can we improve agriculture to reduce the pressure in forested areas? One of the top 20 questions for forestry and landscapes, apparently.
Brainfood: Teak origins, Rice diversity, Urban ag, Mapping anthropogenic pressure, Fungal divesity, Bitter cucumber
- Genetic resources of teak (Tectona grandis Linn. f.)—strong genetic structure among natural populations. Centre of diversity in semi-moist eastern coast of India and in Myanmar.
- Analysis of Genetic Diversity and Population Structure of Rice Germplasm from North-Eastern Region of India and Development of a Core Germplasm Set. 10% of 7000 very diverse accessions recovers 99.9% of allelic diversity.
- Global assessment of urban and peri-urban agriculture: irrigated and rainfed croplands. Urban croplands represent 6% of total. No word on what percentage of genetic diversity, but I bet more than 6%.
- Satellite Earth observation data to identify anthropogenic pressures in selected protected areas. Some data can be used to identify some pressures.
- Global diversity and geography of soil fungi. Climatic factors are key, but look at the diagram.
- Biosynthesis, regulation, and domestication of bitterness in cucumber. So that Dutch breeder, who Jeremy always mentions, who once tasted 10,000 cucumber cotyledons in his quest to breed a nice-tasting one, would not have to do so now. Which is a pity.
Nibbles: Svalbard recruitment, Barley breeding video, Orphan crops breeding, Agroforestry double, Afghan pomegranate, Australian hazlenut, DivSeek video, Raspberry breeding video, Strawberry fungi, OFSP, Genebanks, Old chiles, Mexican cuisine, Shakesperean sallat, Dietary diversity, Seed exchange, European wild animals, Dutch AnGR, UK indicators, Millets promotion, Wheat extravaganza, Deforestation map, Chickens & turkeys, Ancient horses, Kenyan grass, Olive pests, Penang anniversary
- Sorry about the light blogging lately. I’m on leave and Jeremy is in the manure. Thankfully Robert has been picking up the slack lately, apparently because he has nothing better to do. Anyway, here’s a juicy roundup of Nibbles covering the past week and more. Starting with this stunner: Svalbard needs an adviser!
- Breeding better barley: The video. No videos, however, on breeding Africa’s orphan crops. Yet.
- Some of those are agroforestry species. Which is not confined to Africa, of course. But pomegranate is not included, alas for the Afghans. Nor the hazlenut, alas for the Australians, who will however admittedly probably sequence the thing themselves.)
- DivSeek does have a video, though.
- Even raspberry breeding has a video. But if this strawberry hack works for other plants, breeders might not be needed at all :)
- Orange-fleshed sweet potato folks meet in Ghana for annual jamboree.
- An insurance policy for agriculture? Yes, you guessed it.
- Recovering the NM chile. Hot stuff from a cold place. Yes, you guessed it. Again. (BTW, not only important in New Mexico.
- How to make a 17th century sallat. You heard me.
- CIAT on getting ahead of dietary trends. No, not from the 17th century. This being the current situation, however. And more specifically for dietary diversity among women. Yes, it’s all about diversification. Including in homegardens. Which were the great love of the great, late Olga Linares.
- The benefits would be so great to get nutrition right. And yet we haven’t. And without Olga it’s not going to be any easier. Maybe we could start by curing Indians of their pizza habit.
- The largest seed exchange in the world. It says here. There I was thinking it was the CGIAR genebanks.
- Rewilding Europe. Kinda sorta.
- The Dutch have new policies on conserving livestock genetic resources. At least yaks are not an issue.
- Meanwhile, the UK biodiversity indicators include one on crop genetic diversity.
- Maybe all it needs is better marketing, like these millets?
- Or perhaps a data portal, like wheat’s.
- Which may soon be out of date for the Punjab. Or should be, anyway, according to this IFPRI study. And also for the US, according to this maverick breeder getting a writeup in the NY Times.
- Be that as it may, help is on the way for wheat, in the form of its wild relatives. According to some people who should know.
- Interactive global deforestation map. Because we can.
- Black chicken? And why not? Not Icelandic, though, I’m willing to bet. Chickens? “…it was the forced opening of China by the West in the 1840s that made the modern [chicken] possible.” Not so the turkey, though.
- Ancient horse breeders liked spots. And then they didn’t. And then they did…
- Disease resistant Napier grass in Kenya. Must ask the mother-in-law whether she has some.
- Oh dear, Italian olives are in trouble. Again. Ah, yes, the olive, symbol of peace.
- Penang Botanic Gardens has a big birthday.
- Hope that keeps you going for a while…