A seed of doubt

Kew’s Millennium Seed Bank has soft-launched SeedPOD, the Seed Portal for Online Data, a platform intended to make information about native seed collections, their availability and their propagation easier to find. The ambition is to tackle one of the persistent bottlenecks in ecological restoration: getting the right seed, from the right source, to the right place.

It is an interesting development, and one that fits into a broader restoration workflow I explored in an earlier post on restoration and digital tools. There is another tool that could usefully complement it: the RHS Garden Climate Assessment Tool (GCAT).

The idea is to connect three stages of a practical restoration exercise. First, identify a native species appropriate to the planting location. Then find out whether seed is available from the Millennium Seed Bank or another seed supplier. Finally, check whether the species is likely to remain climatically suitable at the planting site under future climate scenarios. If all goes well, obtain the seed and grow the plants.

I decided to try this with Markhamia obtusifolia, an indigenous African tree that might be an interesting addition to my garden in Nairobi.

The first stop was SeedPOD. Here I found a bit of a discrepancy. The older Millennium Seed Bank seed list website listed three accessions: one from Malawi and two from Botswana. The new SeedPOD interface showed just one accession, held by IIAM (Instituto de Investigação Agrária de Moçambique) in Maputo, and apparently the only one currently available. It is not clear whether this reflects a change in the underlying holdings, a difference in what the two databases display, or simply a difference in how availability is recorded. Either way, it raises a question about how complete and up to date the new interface is.

There was a little more information from BGCI’s PlantSearch, accessible through SeedPOD, which identified 15 ex situ sites holding the species. That suggests that the tree is represented in a reasonable number of living collections, although it does not tell us whether any of them can supply seed. BTW, the links from SeedPOD to GBIF and Genesys did not work when I tried them, and I could not find the promised list of seed suppliers either. So the next step in the workflow — actually finding some seed — remains elusive. (ChatGPT could not find any seed suppliers in Nairobi though it did flag a couple of plausible options for M. lutea.)

At least the climate assessment was more straightforward. Using GCAT, I was able to establish that M. obtusifolia should be climatically suitable for planting in Nairobi under most climate change scenarios. This is a useful check, although it does not settle questions of soil, provenance, or other ecological requirements. Climate suitability is not quite the same thing as ecological suitability.

None of this diminishes the value of SeedPOD’s underlying ambition. Bringing together information previously dispersed information is worthwhile. But the real test is whether a user can move easily and quickly from a species name to a viable source of seed, assess its suitability for a particular restoration site, and eventually get plants into the ground.

My little experiment has not quite completed that journey. SeedPOD helped identify ex situ holdings, and GCAT provided a positive climate-suitability assessment. But the route from a database record to an actual packet of seed is still surprisingly difficult to navigate. A platform intended to connect seed conservation with ecological restoration will ultimately be judged not just by how much information it brings together, but by whether people can use it to get seed into the ground.

Brainfood: iNaturalist, Agroforestry mapping, Crop mapping, Intercrop mapping, Smartphone phenotyping, Bean phenology, Rice phenology, Grape database

Eucalyptus: it’s complicated

Are eucalyptus plantations good or bad?

I’ve been wondering about this one for a while. Back in 2010, I wrote about my mother-in-law’s eucalypts near Limuru in Kenya. She had been tending and coppicing them for years, and they were her main source of firewood. When part of the plantation was felled by government decree, she considered planting indigenous trees, but eucalypts were, as I put it then, “too fast-growing to give up altogether.”

Two new studies make the same point rather more systematically. In Uganda, eucalyptus plantations appear to have some positive effects on livelihood, including higher cattle holdings than among households near pine plantations, without producing the sweeping negative effects sometimes attributed to them. In Brazil, mixed eucalyptus–native plantations (as a transitional stage in restoration) produced substantially more biomass than native-only plantings, while allowing native trees to regenerate. The timber income also covered a significant proportion of restoration costs.

So the value of eucalyptus depends on what it’s doing there, what it replaced, what else is growing with it, and what people are getting from it. A plantation replacing native forest is one thing. Eucalyptus providing firewood to my mother-in-law, generating income from degraded land, or helping pay for ecological restoration is another.

The tree is the same. The story isn’t.

The apples of our eye

Apples have been another recurring obsession on the blog, maybe because they make the conservation problem unusually tangible, and immediate. Pretty much everyone thinks they know what an apple is, but the diversity hidden behind that word is enormous, and not much visible in supermarkets. A lot of it may have disappeared, but you can pretty much guarantee a slew of heritage apple stories in the press come autumn (and so it begins), so I guess people care. Here’s a selection of posts about apples spanning 15 years. There’s a lot more out there in the archive for you to explore.

Let’s start at the beginning, or as close to it as the genetics can get us. In 2016’s The Adam and Eve of apples?, I discussed the wild apple forests of southeastern Kazakhstan, where all of the world’s apple varieties can be traced back to an ancestral population of Malus sieversii — spread, if you believe the more colourful tellings, by bears eating the sweetest fruit and pooping the seeds around the forest. As usual, though, the genetics turned out to be more interesting than the headline. The cultivated apple isn’t a simple straight line from one mother tree; it’s the product of a long history of movement, hybridization and exchange between wild and domesticated populations all along the old trade routes out of Central Asia.

But those forests are in danger. Back in 2009, in Wild fruit relatives threatened in Central Asia, I looked at how the wild relatives of apples and other crops were vanishing along with their habitat. Among them was Malus niedzwetzkyana, the remarkable red-fleshed apple of Kyrgyzstan. These aren’t just obscure wild trees: they represented genetic diversity that has already made its way into cultivated apples, and might still have something to offer breeders. That red-fleshed apple came back a year later in Not the world’s first red apple. A new red-fleshed variety was being breathlessly presented in the press as a novelty — not GM, just 15 years of patient crossing and 20,000 rejected seedlings — but nature had got there first. M. niedzwetzkyana has been doing red flesh for millennia.

The cultivated stock has its own story of loss. In 2009’s Saving an apple a day, I looked at the loss of American apple varieties, and at the people trying to rescue what remained. Thousands of named varieties had once been grown in the United States; only a fraction survived in orchards, collections and the memories of the people who knew what they tasted like. It was a nice illustration of a familiar conservation paradox: you can lose a lot of diversity without even noticing, because the supermarket keeps selling you apples.

However, that same year, a study added a wrinkle to the “thousands lost” narrative. In Lost apples found, Jeremy pushed back a little on the standard version of the story — the one where 6,800 of 7,100 named 19th-century American apple varieties are simply gone. A team from the University of Arizona and USDA had gone looking for ghosts among old apple trees on historic farmsteads in Arizona, Utah and New Mexico. Only 34 of the resulting genotypes matched a known variety. The other 110, spread across 160 trees, matched nothing on record. Some of those are probably unnamed seedlings that never had a name to lose in the first place. But some, surely, are the supposedly lost varieties everyone had given up on. Not extinct, just lurking.

Seven years on, the USDA apple folks came back with another version of the answer. In As American as apples, Gayle Volk summarized her and Adam Henk’s trawl through historic nursery catalogues, which turned up 891 named apple cultivars grown in the US before 1908. They went looking for the 150 that seemed to matter most. The payoff: 90% are still findable today, safely tucked away in genebanks, private collections or specialist nurseries. Only 51 high-priority cultivars remained unaccounted for in any collection. For now.

The lesson isn’t that genetic erosion doesn’t happen. It plainly does, and 30 fruit nurseries vanishing a year is not nothing. No, the lesson is that “extinct” is much harder to prove than “endangered,” and pomologists with their equivalent of a swab kit keep turning out to be more patient, and luckier, than we have any right to hope.

Conserving what’s left, of course, depends on people as much as on collections and gene sequencers. In 2014, I offered up Irish eyes smiling about apple conservation. The post was prompted by Michael Hennerty’s beautiful book on the Irish apple, but the real story was the people who had nurtured the 68 varieties documented in the book over the years. Conservation often depends on a motley collection of people keeping things alive long enough for some fancy institution to discover that they matter. A few years later, Jeremy went into much more detail on Irish apples on his podcast.

Institutions, though, can be just as precarious as the work of any orchard-keeper or amateur gardener. Across the Irish Sea, the story of the UK’s apple collection showed just how fragile even a major national genebank can be. The National Fruit Collection at Brogdale in Kent, with its hundreds of apple varieties, came under threat when its funding was thrown into doubt, prompting a succession of stories about sales, new management and relocations. Oh, and royalty. Anyway, the collection is fine, but the saga was a reminder that conservation is not just about keeping things alive. You have to keep them alive with enough institutional resilience that they can survive the next crisis.

Taken together, these posts highlight a sometimes overlooked aspect of safeguarding agrobiodiversity. Conservation is not just putting varieties safely into collections, nor, on the other hand, is it just protecting wild populations from destruction. Apples show that the two are connected — or should be. These are, in the jargon, complementary conservation strategies. The diversity in a genebank has a history outside it, and the diversity out in the wild and in farms may only have a future in a genebank. We really do need both, it’s not just mom and apple pie rhetoric.

Nibbles: African food systems, Uganda cassava, Uganda pastoralists, Butternut conservation, Seed transfer zones webinar, Frozen Zoo, India fish genebank

  1. Swapping maize for indigenous crops won’t fix African food systems designed around markets and policies that still favour a narrow range of crops.
  2. Cassava is both a food security fallback and a commercial crop in Uganda, but disease, climate change and declining diversity make its conservation an increasingly urgent form of insurance. But what about the markets and policies?
  3. When livestock and crops fail, Ugandan pastoralists draw on wild plants for food, underlining how much food-system resilience still sits outside the formal agricultural system, with its markets and policies.
  4. The Morton Arboretum is using living collections and genetic research to help the threatened butternut tree cope with changing conditions.
  5. Webinar discusses global approaches to seed provenancing and transfer zones, useful for anyone who wants to move native plants without moving the wrong genes. Butternut very interested.
  6. San Diego Zoo Wildlife Alliance’s Frozen Zoo preserves genetic material of plant and animal species that may disappear, from DNA to cells to organisms. Butternut volunteers.
  7. New Indian facility combines ex situ fish conservation with community aquaculture. Good model for much of the above?