Genebank data everywhere
Those who follow such things will no doubt be as excited as we are about the fact that USDA’s National Plant Germplasm System has just switched over from its old workhorse documentation system, GRIN, to the young pretender, GRIN-Global. ((Though CIMMYT actually beat them to it.)) You can access all the passport, characterization and evaluation data USDA has on its 574,764 accessions from the GRIN-Global website. What the user sees on the public interface when searching for and ordering germplasm, though, is only a small part of the picture. All USDA genebank staff around the country are also using the Curator Tool to manage their collections and fulfil order requests. It’s been a massive undertaking. And the software is actually available to all. So if you’re a genebank curator and would like to experiment with the same documentation system that the mighty NPGS uses, check it out.
As it happens, we’ve also just come across a case of a user downloading some GRIN data and serving it up on its own. The good folks at Widespread Malus have extracted all the Malus sieversii data and stuck them in an Excel spreadsheet, to make things even easier for wild apple enthusiasts. Nice idea.
Nibbles: Tree conservation, Seed fairs, Baobab powder, Simran’s book, Cheesy prince, Companies & CC, Organic breeding
- Crowdfunding the Zero Tree Extinctions project.
- Seed fairs for climate change adaptation in Zimbabwe.
- Make mine a baobab smoothie.
- Another great review of Simran Sethi’s new book Bread, Wine, Chocolate: The Slow Loss of Foods We Love.
- Blessed are the cheesemakers.
- Big Food taking fright?
- Breeding the organic breeders of the future.
Brainfood: Heirloom lentil, American oil palm, Trees on farms, Cowpea selection, Apple health benefits, Traditional remedies, Bean landscapes, Maize and CC
- Making Heritage: The Case of Black Beluga Agriculture on the Northern Great Plains. That would be Black Beluga lentils. Which seems a weird subject for feminist ethnography, generative criticism and reflexivity, but I’m game if you are.
- Genetic and phenotypic diversity of natural American oil palm (Elaeis oleifera (H.B.K.) Cortés) accessions. Four geographical clusters, and a core collection.
- Complementarity of native and introduced tree species: exploring timber supply on the east coast of Madagascar. Farmers on the edge of a protected area need a diverse mix of tree species to grow.
- Farmer participation in selection within segregating populations of cowpea in Volta Region, Ghana. From 6 F3 populations with parents from Botswana, Ghana, Nigeria, Senegal, and the USA to 24 lines which farmers liked.
- Apple juices from ancient Italian cultivars: a study on mature endothelial cells model. Old apple cultivars are good for you. Or at least for human umbilical vascular endothelial cells.
- Intellectual property rights, benefit-sharing and development of “improved traditional medicines”: A new approach. Ahem, what were those old apples again?
- Landscape genetics, adaptive diversity and population structure in Phaseolus vulgaris. Domestication sites (still only 2) pinpointed in the landscape.
- Changes in Climate, Crops, and Tradition: Cajete Maize and the Rainfed Farming Systems of Oaxaca, Mexico. Life is hard, and getting harder.
Brainfood: Camel diversity, Livestock vs wildlife, Tunisian fig diversity, In vitro artichokes, Habanero diversity, Sorghum diversity double, Greek cherry diversity, Barley domestication, Omani bananas, IBPGR collecting, Buckwheat flow
- Molecular characterization of camel breeds of Gujarat using microsatellite markers. The two sympatric camel breeds Kachchhi and Kharai are genetically distinct.
- Beefing Up Species Richness? The Effect of Land-Use on Mammal Diversity in an Arid Biodiversity Hotspot. Livestock and wildlife can co-exist.
- Analysis of genetic diversity of Tunisian caprifig (Ficus carica L.) accessions using simple sequence repeat (SSR) markers. Diversity low and mixed up.
- A validated slow-growth in vitro conservation protocol for globe artichoke germplasm: A cost-effective tool to preserve from wild to elite genotypes. Sounds promising.
- Synthesis of a base population of Habanero pepper. That’s an equal mixture of F2 seeds from all crosses obtained among 31 accessions. Now go crazy, breeders!
- ISSR-based analysis of genetic diversity among sorghum landraces growing in some parts of Saudi Arabia and Yemen. Differentiates some white from dark-grained landraces, and among some geographic areas.
- Assessment of sorghum germplasm from Burkina Faso and South Africa to identify new sources of resistance to grain mold and anthracnose. Breeders book flight to Ouagadougou.
- Diversity of morpho-physiological traits in worldwide sweet cherry cultivars of GeneBank collection using multivariate analysis. The national and international material from the Greek genebank falls into 3 groups. Apparently that will be useful to breeders. Who are unavailable for comment.
- Barley domestication: the end of a central dogma? Non-centres, not centres.
- Distribution and diversity of banana (Musa spp.) in Wadi Tiwi, northern Oman. An unfavourable environment at a crossroads of trade routes makes for interesting diversity.
- Plant genetic resources collections and associated information as a baseline resource for genetic diversity studies: an assessment of the IBPGR-supported collections. IBPGR collecting missions in 136 countries between 1975 and 1995 collected over 200,000 samples: here comes the data.
- Social and environmental influences on tartary buckwheat (Fagopyrum tataricum Gaertn.) varietal diversity in Yunnan, China. Lots of exchange of material among farmers, which needs to continue.