- Yeah, on this climate change thing? We’re doomed.
- Oh crap, there’s another genome: eucalyptus this time. Here’s the paper, you geeks. Great news for koalas, whose genome we still await, incidentally. Yeah, where are we with that?
- SPC trains some breeders with Treaty money.
- I wonder if they were told about Evolutionary Plant Breeding.
- IFPRI has its new food policy report out. More on this later from us, I suspect.
- The Bonn Titan Arum blooms! Well, I’m calling it a crop wild relative.
- That gluten allergy? Don’t blame modern wheat varieties.
- Podcast on the importance of genetic resources to sustainable forests.
- Why rice? The Filipino view.
- And the African view. NERICA’s good for women. And bad.
- Bioversity blogs about World Cocoa Conference 2014, gets dates wrong. It’s on now.
- Crop wild relatives in The Scientist. But I’m biased…
- Busting malnutrition myths. Because they’re there.
- There’s probably a few myths out there about halophytes too.
Brainfood: Homegardens, AnGR genomic conservation, Forest services, Desert wheat, Wild artichoke, Enset ethnobotany, Turkish sheep, Eggplant evaluation, Bolivian maize, Cattle & fire
- Biodiversity conservation in home gardens: traditional knowledge, use patterns and implications for management. Most cliches about homegardens are valid in Benin, apart from the one which suggests old people know more about them.
- Genomics applied to management strategies in conservation programmes. How gene jockeys can help you maintain enough diversity within breeds, but no more.
- Living close to forests enhances people׳s perception of ecosystem services in a forest–agricultural landscape of West Java, Indonesia. And agroforests perceived as being best providers of services, even better than actual forest.
- Saharan wheats: before they disappear. Surprisingly, they have not been much studied.
- The wild gene pool of globe artichoke. Four wild species lack studies of crossability with the cultigen, but look interesting and could actually be in GB2.
- Indigenous knowledge, use and on-farm management of enset (Ensete ventricosum (Welw.) Cheesman) diversity in Wolaita, Southern Ethiopia. Maybe 100 varieties, 10 dishes, lots of knowledge.
- Genetic diversity in nine native Turkish sheep breeds based on microsatellite analysis. Most variation within breeds, but not much higher that that of European breeds.
- Genetic Diversity, Population Structure, and Resistance to Phytophthora capsici of a Worldwide Collection of Eggplant Germplasm. 99 accessions, 4 species, 5 continents, 32 countries, 1 resistant genotype.
- Conserving agrobiodiversity amid global change, migration, and nontraditional livelihood networks: the dynamic uses of cultural landscape knowledge. Things are changing, but maize diversity abides.
- Fuel, fire and cattle in African highlands: Traditional management maintains a mosaic heathland landscape. Sustainable management of vegetation (including some CWR?) in Ethiopian highlands means using fire and cattle in consort.
Nibbles: ICARDA barley, Trade wars, Aquaculture risks, Local vs organic, Chicken genetics, Dog origins, SSEx health, Diversity loss
- ICARDA DG breaks down barley research. Surprisingly without mentioning the germplasm collection.
- Great interactive infographic of all the world’s trade disputes, many of which of course involve agricultural products.
- Intensifying aquaculture comes with some risks.
- Local doesn’t mean organic. And vice versa.
- “Chickens are polymaths.” A new project will scratch around into the genetics of that.
- Only Alaskan dog breeds are truly American.
- Seed Savers Exchange busy making their seed happy.
- Forest and language diversity go together. Literally.
Brainfood: Lima been diversity, Cassava diversity, Urban soils, Oil palm seed supply, Ginger ploidy, Certification, Gene flow, Maize & drought, Coffee seed storage, Pathogens on seeds, Wheat breeding, Intensification tradeoffs
- Genetic structure within the Mesoamerican gene pool of wild Phaseolus lunatus (Fabaceae) from Mexico as revealed by microsatellite markers: Implications for conservation and the domestication of the species. Three, not just two, genepools.
- Farmer’s Knowledge on Selection and Conservation of Cassava (Manihot esculanta) Genetic Resources in Tanzania. Farmers exchange landraces, some of which are widespread and others more restricted in distribution. Only about 10% are new, but some have been lost.
- Urban cultivation in allotments maintains soil qualities adversely affected by conventional agriculture. You can farm in cities without killing the soil.
- Social institutional dynamics of seed system reliability: the case of oil palm in Benin. Farmers are being increasingly screwed.
- Natural occurrence of mixploid ginger (Zingiber officinale Rosc.) in China and its morphological variations. About a quarter of plants have both diploid and tetraploid cells, and they look different; no plants are wholly tetraploid. Weird.
- Conserving biodiversity through certification of tropical agroforestry crops at local and landscape scales. Certifying the coffee or cacao farm only is usually not enough.
- Is gene flow the most important evolutionary force in plants? May well be, which means that conservationists, among others, need to take it into account. Fortunately, they have the data-rich genomic tools to do so.
- Greater Sensitivity to Drought Accompanies Maize Yield Increase in the U.S. Midwest. It’s agronomy’s fault.
- Desiccation and storage studies on three cultivars of Arabica coffee. Yeah, not orthodox. Didn’t we know that already though?
- Seed-borne fungi on genebank-stored cruciferous seeds from Japan. There’s lots of them. And something needs to be done about it.
- Delivering drought tolerance to those who need it; from genetic resource to cultivar. In making synthetic wheat, you can fiddle with the AB as well as the D genomes, but then you have to phenotype properly under target stress conditions, and have a way of tailoring the resulting global public goods to local needs.
- The Effects of Agricultural Technological Progress on Deforestation: What Do We Really Know? Not as much as we thought we did.
- Large-scale trade-off between agricultural intensification and crop pollination services. Intensification bad for pollinators in France, so bad for agricultural productivity and stability.
- Achieving production and conservation simultaneously in tropical agricultural landscapes. Intensification good for smallholder income in Uganda, bad for birds. If only birds were pollinators.
The future of genebanks unfolds, a bit
The potential benefits of recent developments in DNA sequencing technologies to both collection management and use will also be explored during the course of the project.
That was from an article a couple of days ago on the future of the UK’s vegetables genebank. Well, we learned yesterday that for rice, at least, that brave new world is almost at hand:
…access to 3,000 genomes of rice sequence data will tremendously accelerate the ability of breeding programs to overcome key hurdles mankind faces in the near future.
That would be DNA sequences from 2,466 of the International Rice Genebank Collection’s (IRRI) accessions, plus 534 accessions housed at the CAAS genebank, amounting to 13.4 terabytes of data. This begins the long road to sequencing the whole IRRI collection of about 100,000 accessions, the rationale for which was recently set out:
In this paper, we will discuss how genotyping and sequencing can be integrated into the activities of a modern gene bank to revolutionize the way scientists document the genetic identity of their accessions; track seed lots, varieties, and alleles; identify duplicates; and rationalize active collections, and how the availability of genomics data are likely to motivate innovative collaborations with the larger research and breeding communities to engage in systematic and rigorous phenotyping and multilocation evaluation of the genetic resources in gene banks around the world. The objective is to understand and eventually predict how variation at the DNA level helps determine the phenotypic potential of an individual or population. Leadership and vision are needed to coordinate the characterization of collections and to integrate genotypic and phenotypic information in ways that will illuminate the value of these resources. Genotyping of collections represents a powerful starting point that will enable gene banks to become more effective as stewards of crop biodiversity.
Alas, the news came a few days too late for the Pahiyas Festival:
Clearly, rice is the main inspiration of this delightful affair. The rice grains, rice plants and rice seedlings on display may all seem the same, but a closer look will reveal that they are not. Some seeds are longer, some are rounder and some are lighter in color than others, reminding us of just how rich and diverse our rice varieties are.
Maybe next year.
Meanwhile, if you want to celebrate instead by cracking open a nice bottle of wine from the Quinta do Crasto estate in Portugal, well, they’re using high-resolution genotyping there as well to figure out just exactly what clones they have in their fields. What’s that you say? You don’t drink wine? How about a nice bar of quality heirloom chocolate, also thoroughly genotyped, then? Truly the future is upon us.