- “It’s embarrassing if your lab is the only one that isn’t sharing data.” One would hope so, but…
- CRISPR snips out virus from banana genome.
- CIP-related potato varieties are planted on about 1.43 Mha, or 19% of total area.
- Saving Peru’s agricultural biodiversity is more than just about markets.
- I suspect the same is the case for Madagascar’s wild coffees.
- Studying evolution experimentally. Using mice. Plants would have been cooler.
- More on Access to Seeds Index: “Seeds of Nope” seems unnecessarily negative, though.
Crop wild relatives get special treatment
…this Special Volume of Plant Genetic Resources, Characterization and Evaluation is very timely as CWR science finally moves beyond the theoretical to the increasing applied, to meet breeders and consumers growing demands. It includes prioritized CWR inventories at different geographical levels viz. national (Bissessur et al., 2019; Dickson et al., 2019), regional (Allen et al., 2019; Fitzgerald et al., 2019) levels. Tools to facilitate conservation planning have also been developed (Magos Brehm et al., 2019; Holness et al., 2019), and regional conservation strategies and approaches have been developed (Allen et al., 2019; Kell et al., 2016).
Ok, the whole thing is not open access, but at least the introduction to the Special Issue is. And since I’m on the subject, there’s a nice summary just out of the state of wild Coffea in Madagascar. Coincidentally, one of the paper in the special issue is on the CWR of Mauritius, among which Coffea features very prominently.
The wild coffee species that grow in northern Madagascar are genetically similar to Coffea species found on Grande Comore in the Comoros – a volcanic archipelago off the east coast of Africa, near Mozambique. Other species have spread from Madagascar to Mauritius and Reunion Island.
Brainfood: Coca phylogeny, Potato taste & nutrition & resistance, CC & nutrition, Light & nutrition, Remote poverty, Spicy toms, Input subsidies, Broilerocene, European livestock then & now, Bean domestication, Peach domestication, Machine conservation, Habitat fragmentation, Conservation planning, Taxidermy, Wheat diversity, Livestock GS
- Phylogenetic inference in section Archerythroxylum informs taxonomy, biogeography, and the domestication of coca (Erythroxylum species). Morphology is not enough.
- Improving Flavor to Increase Consumption. Yield is not enough.
- The Nutritional Contribution of Potato Varietal Diversity in Andean Food Systems: a Case Study. Yield is not enough.
- Stacking three late blight resistance genes from wild species directly into African highland potato varieties confers complete field resistance to local blight races. One resistance gene is not enough.
- Income growth and climate change effects on global nutrition security to mid-century. Calories will not be enough.
- Urbanization and Child Nutritional Outcomes. Urbanization is enough.
- Socioecologically informed use of remote sensing data to predict rural household poverty. Night light is not enough.
- Capsaicinoids: Pungency beyond Capsicum. Peppers and tomatoes are not enough.
- The impact of agricultural input subsidies on food and nutrition security: a systematic review. The data are not enough.
- The broiler chicken as a signal of a human reconfigured biosphere. The broiler is enough.
- Pre-Roman improvements to agricultural production: Evidence from livestock husbandry in late prehistoric Italy. The Romans were not enough.
- Optimizing ex situ genetic resource collections for European livestock conservation. One genebank is not enough.
- Does the Genomic Landscape of Species Divergence in Phaseolus Beans Coerce Parallel Signatures of Adaptation and Domestication? One genome is enough.
- Genome re-sequencing reveals the evolutionary history of peach fruit edibility. Human selection was not enough.
- Predicting plant conservation priorities on a global scale. This black box is enough.
- Is habitat fragmentation bad for biodiversity? Small patches may be enough.
- Synergies between the key biodiversity area and systematic conservation planning approaches. One conservation approach is not enough.
- Capturing goats: documenting two hundred years of mitochondrial DNA diversity among goat populations from Britain and Ireland. Stuffed goats are enough.
- Decline in climate resilience of European wheat. The current varieties are not enough.
- Harnessing genomic information for livestock improvement. Genomic selection was going to be enough.
Brainfood: Stressful crops, Quinoa, Ganja genome, Medicinal vetch, CWR in PAs, CWR in Zambian farms, African viral chickens, Naked barley, Farmer trials, Cotton genomes, Tuscan toms, Land sharing, Nigerian goats, Walnut diversity, Bean breeders, Sweet rice
- Developing naturally stress-resistant crops for a sustainable agriculture. Can’t help thinking there will be a trade-off.
- Quinoa Abiotic Stress Responses: A Review. Case in point?
- A physical and genetic map of Cannabis sativa identifies extensive rearrangement at the 2 THC/CBD acid synthase locus. At last, the prospect of better weed.
- In vitro anthelmintic effect of Vicia pannonica var. purpurascens on trichostrongylosis in sheep. From Turkish folk medicine to the big time?
- Should plant breeders be denied of genetic resources from protected areas? Not if you put it that way. Maybe they should be valued? There’s a way to do that…
- Estimating in situ conservation costs of Zambian crop wild relatives under alternative conservation goals. Put it out to tender.
- The genetic diversity of local african chickens: A potential for selection of chickens resistant to viral infections. No word on their monetary value, though.
- Agro-morphological diversity of Nepalese naked barley landraces. Lots of diversity, little used as yet by breeders.
- Generating Farm-Validated Variety Recommendations for Climate Adaptation. One word: tricot.
- Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense. 13 QTLs for better fibre quality.
- Ancient Tomato (Solanum lycopersicum L.) Varieties of Tuscany Have High Contents of Bioactive Compounds. Better than commercial varieties, apparently.
- Biodiversity and yield under different land-use types in orchard/vineyard landscapes: A meta-analysis. Land sharing works.
- Small Ruminants as a Source of Financial Security Among Women in Rural Southwest Nigeria. Better with education, extension and cooperation.
- Analysis of genetic diversity and structure in a worldwide walnut (Juglans regia L.) germplasm using SSR markers. W Europe/N America vs E Europe/Asia.
- David Bond and Jean Picard: Two pivotal breeders of faba bean in the 20th century. Bond and Picard?
- Status and factors influencing on-farm conservation of Kam Sweet Rice (Oryza sativa L.) genetic resources in southeast Guizhou Province, China. In the end of women and the old.
Brainfood: Conservation indicator, Asian diversity, Sorghum QTLs, Wheat & barley evolution, Nematode detection, Gut microbiome, IBPGR base collection, Speed breeding, Pigeonpeas double, Dingo genetics, Wild tea, Yam anthracnose, Global land use change, Tree breeding double
- Comprehensiveness of conservation of useful wild plants: An operational indicator for biodiversity and sustainable development targets. Lots to do. Lots.
- The East Asiatic region of crop plant diversity. Southwest China especially rich, with its 44 species of kiwifruit, for example.
- The Sorghum QTL Atlas: a powerful tool for trait dissection, comparative genomics and crop improvement. Maybe this will get the stuff used a bit more.
- Domestication and crop evolution of wheat and barley: Genes, genomics, and future directions. Much progress recently, but high-resolution identification of crop-wild introgressions remains a gap.
- Real-time PCR, a great tool for fast identification, sensitive detection and quantification of important plant-parasitic nematodes. Results in 3 hours.
- Gut microbiome transition across a lifestyle gradient in Himalaya. Composition (but not diversity) can change in a generation when foragers transition to agriculture.
- Are the old International Board for Plant Genetic Resources (IBPGR) base collections available through the Plant Treaty’s multilateral system of access and benefit sharing? A review. Well, about 80% of them may be.
- Speed breeding in growth chambers and glasshouses for crop breeding and model plant research. Hacking the breeders’ equation: one giant leap…
- The drivers and methodologies for exploiting wild Cajanus genome in pigeonpea breeding. Sources of high protein, CMS, self-pollination, and resistances to various biotic stresses; but may need to rethink the secondary genepool.
- Development and Application of High-Density Axiom Cajanus SNP Array with 56K SNPs to Understand the Genome Architecture of Released Cultivars and Founder Genotypes. Top 6 founders accounted for 50% of the genetic base of released cultivars. Could use more of the above, in other words.
- Genomic analysis of dingoes identifies genomic regions under reversible selection during domestication and feralization. They’re reverting to wolves, genetically speaking.
- Hongyacha, a Naturally Caffeine-Free Tea Plant from Fujian, China. Well, wild tea relative anyway.
- An EST-SSR based genetic linkage map and identification of QTLs for anthracnose disease resistance in water yam (Dioscorea alata L.). One QTL looks promising.
- Global assessment and mapping of changes in mesoscale landscapes: 1992–2015. Main changes were forest→agriculture, followed by agriculture→forest.
- Quantitative Genetics and Genomics Converge to Accelerate Forest Tree Breeding. Great potential, on the brink, just around the corner…
- Genome Editing in Trees: From Multiple Repair Pathways to Long-Term Stability. Great potential, on the brink, just around the corner…