- Biodiversity conservation in home gardens: traditional knowledge, use patterns and implications for management. Most cliches about homegardens are valid in Benin, apart from the one which suggests old people know more about them.
- Genomics applied to management strategies in conservation programmes. How gene jockeys can help you maintain enough diversity within breeds, but no more.
- Living close to forests enhances people׳s perception of ecosystem services in a forest–agricultural landscape of West Java, Indonesia. And agroforests perceived as being best providers of services, even better than actual forest.
- Saharan wheats: before they disappear. Surprisingly, they have not been much studied.
- The wild gene pool of globe artichoke. Four wild species lack studies of crossability with the cultigen, but look interesting and could actually be in GB2.
- Indigenous knowledge, use and on-farm management of enset (Ensete ventricosum (Welw.) Cheesman) diversity in Wolaita, Southern Ethiopia. Maybe 100 varieties, 10 dishes, lots of knowledge.
- Genetic diversity in nine native Turkish sheep breeds based on microsatellite analysis. Most variation within breeds, but not much higher that that of European breeds.
- Genetic Diversity, Population Structure, and Resistance to Phytophthora capsici of a Worldwide Collection of Eggplant Germplasm. 99 accessions, 4 species, 5 continents, 32 countries, 1 resistant genotype.
- Conserving agrobiodiversity amid global change, migration, and nontraditional livelihood networks: the dynamic uses of cultural landscape knowledge. Things are changing, but maize diversity abides.
- Fuel, fire and cattle in African highlands: Traditional management maintains a mosaic heathland landscape. Sustainable management of vegetation (including some CWR?) in Ethiopian highlands means using fire and cattle in consort.
Nibbles: ICARDA barley, Trade wars, Aquaculture risks, Local vs organic, Chicken genetics, Dog origins, SSEx health, Diversity loss
- ICARDA DG breaks down barley research. Surprisingly without mentioning the germplasm collection.
- Great interactive infographic of all the world’s trade disputes, many of which of course involve agricultural products.
- Intensifying aquaculture comes with some risks.
- Local doesn’t mean organic. And vice versa.
- “Chickens are polymaths.” A new project will scratch around into the genetics of that.
- Only Alaskan dog breeds are truly American.
- Seed Savers Exchange busy making their seed happy.
- Forest and language diversity go together. Literally.
How are forest genetic resources involved in responding to climate change?
According to Ian Dawson, one of the authors of a recent review in Forest Ecology and Management ((Alfaro, R., Fady, B., Vendramin, G., Dawson, I., Fleming, R., Sáenz-Romero, C., Lindig-Cisneros, R., Murdock, T., Vinceti, B., Navarro, C., Skrøppa, T., Baldinelli, G., El-Kassaby, Y., & Loo, J. (2014). The role of forest genetic resources in responding to biotic and abiotic factors in the context of anthropogenic climate change Forest Ecology and Management DOI: 10.1016/j.foreco.2014.04.006)), led by Rene Alfaro, it depends…
The evidence for the negative effects of climate change on forests globally is mounting, with a good example being the outbreak of mountain pine beetle in British Columbia, Canada, believed to be caused by unusually warm winters. It has attacked more than 13 million hectares of lodgepole pine forests over the last decade. Such climate-influenced pest and disease attacks may be particularly problematic for trees, as pests and diseases with shorter generation intervals can evolve more quickly in response to new environmental conditions than their hosts can.
Phenotypic plasticity (the capacity of a particular genotype to express different phenotypes under different environmental conditions), genetic adaptation and seed and pollen migration all have a role to play in responding to climate change, but the speed at which environments alter may be greater than the ability of trees to cope through natural processes, and human help may sometimes be needed. Just as natural responses to climate change depend on genetic resources, so too do human-mediated responses such as altered forest management practices, the facilitated translocation of tree planting material and tree breeding.
Forest managers, however, sometimes question whether interventions formulated to respond to climate change are economically justified, and tropical foresters are likely to consider commercial agriculture and unplanned logging more important production threats. In this setting, appropriate management interventions that are good practice under ‘business as usual’ scenarios are likely to be more effective than those specifically to address climate issues.
For the future, field trials established across different environments are required that allow a better understanding of adaptive variation in tree species, including in drought, pest, disease and fire tolerance and resistance. Another interesting question to address is what role epigenetics (check out the term on Wikipedia) has in responding to climate change by providing a temporary buffer against environmental variability, giving the genome time to ‘catch up’ with change.
When dealing with trees that might only be harvested 100 years after they are planted, estimating the level of future climate uncertainty is obviously crucial. Otherwise, the planting of the wrong species at a site could be catastrophic perhaps decades into the future, as observed when 30,000 ha of maritime pine plantations were destroyed in France during the winter of 1984/1985, following the introduction from the 1940s of non-frost-resistant material from the Iberian Peninsula. New breeding approaches to those currently used are also required, as current methods, with the long generation times of trees, are often too slow to respond to change.
Brainfood: Yam tissue culture, Barley core, Date genome, Ecosystem services & land use change, Remote sensing and conservation, Okra diversity, Carob diversity, Mexican genebank project, Chicken skin music, Mongolian camel, Coloured rice
- Effect of various growth regulators on growth of yam (Dioscorea trifida L.) in vitro shoot tips. One small step for yam cryopreservation.
- The USDA Barley Core Collection: Genetic Diversity, Population Structure, and Potential for Genome-Wide Association Studies. 5 sub-populations: roughly, Mediterranean, W Europe, E Europe, Asia and Ethiopia. GWAS effective in locating important phenotypes.
- A first genetic map of date palm (Phoenix dactylifera) reveals long-range genome structure conservation in the palms. Lots of synteny with oil palm and coconut despite differences in genome size. And we now (probably) know how sex determination works.
- Economic evaluation of ecosystem goods and services under different landscape management scenarios. Agriculture usually wins at the expense of more “ecological” land uses, unless income from C and biodiversity (and timber) go up, or discount rates go down.
- Oil in the Sahara: mapping anthropogenic threats to Saharan biodiversity from space. You can spot biodiversity threats from space. More examples along the same lines.
- Genetic and morphological diversity of okra (Abelmoschus esculentus [L.] Moench.) genotypes and their possible relationships, with particular reference to Greek landraces. Much phenotypic variation, less AFLP variation, but geographically structured. Germination characteristics vary with ecology.
- Genetic diversity revealed by EST-SSR markers in carob tree (Ceratonia siliqua L.). First time carbob has been genotyped using microsatellites. And that seems to be the only reason why this work was done.
- Investigation of the genetic diversity of domestic Capra hircus breeds reared within an early goat domestication area in Iran. Breeds are diverse but geographically distinct, the western ones especially. Unlike sheep, which are moved around a lot more. Some evidence of inbreeding, which can and should be counteracted.
- Diversity Assessment and Development of Sustainable Use of Mexican Genetic Resources: Prospects of a SATREPS Project. That would be Science and Technology Research Partnership for Sustainable Development, between the Japanese and Mexican genebanks. Looks like a lot of genotyping and in vitro conservation research on lesser-known crops.
- Establishing the validity of domestication genes using DNA from ancient chickens. You really need ancient DNA to study domestication.
- Genetic diversity and population structure of Mongolian domestic Bactrian camels (Camelus bactrianus). No breeds, no problem.
- Exploring Variability: New Brazilian Varieties SCS119 Rubi and SCS120 Onix for the Specialty Rices Market. Brazilian hipsters now have red and black rice.
Brainfood: Wheat resistance, Wild barley regeneration, Barley improvement, Maize regeneration, Seed pathogens, Colombian rice management, Malawi diversity & nutrition, Modelling pollinators, Women & seeds, Vietnam development, European agrobiodiversity, CIP sweet potato goes to China, American NUS
- Gene bank of sources of spring wheat resistance to leaf-stem diseases. Crop wild relatives to the rescue.
- Evolutionary History of Wild Barley (Hordeum vulgare subsp. spontaneum) Analyzed Using Multilocus Sequence Data and Paleodistribution Modeling. Recently collected material gives different results to genebank accessions, suggesting geneflow during ex situ maintenance?
- Barley genetic variation: implications for crop improvement. “Contemporary plant breeders now benefit from publicly available user-friendly databases providing genotypic and phenotypic information on large numbers of barley accessions.” Barley Genebank Database Heaven? Should talk to the guys above?
- Detection of genetic integrity of conserved maize (Zea mays L.) germplasm in genebanks using SNP markers. Oh crap, that problem with ex situ barley maintenance is an issue with maize as well.
- Incidence of Seed-Borne Mycoflora in Wheat and Rice Germplasm. Oh, I give up, genebanks are doomed.
- Ethnophytopathology: Rice Fields Free of Diseases, from the Culture of Producers in a Nuquí, Chocó-Colombia´s Community. Careful placement of fields in the landscape ensures they don’t get diseases. Who needs genebanks and breeders?
- Farm production diversity is associated with greater household dietary diversity in Malawi: Findings from nationally representative data. Yeah, but settle down, it’s kinda complicated.
- Landscape fragmentation and pollinator movement within agricultural environments: a modelling framework for exploring foraging and movement ecology. Don’t know how your set-asides and whatnots are going to affect pollinators? Well, now there’s a spatially explicit model for that. Which could perhaps be applied to…
- Complex effects of fragmentation on remnant woodland plant communities of a rapidly urbanizing biodiversity hotspot. Would be so interesting to know if there were any socioconomically useful plants (including crop wild relatives) among these remnants.
- Gender, Seeds and Biodiversity. Whether in Pennsylvania or Peru, it’s women that save seeds. (This is from an old book, which has presumably just been digitized, hence its appearance in my RSS feed.)
- Land Use Dynamics, Climate Change, and Food Security in Vietnam: A Global-to-local Modeling Approach. Agriculture is at risk. Better collect all that germplasm. Right? Right?
- Responses of plants, earthworms, spiders and bees to geographic location, agricultural management and surrounding landscape in European arable fields. Mineral N and pesticides not good for agricultural biodiversity. Too bad you can’t really conserve earthworms ex situ.
- Identification and evaluation of major quality characters of introduced sweet potato germplasm resources. 4 accessions out of 32 from CIP were likely to prove very useful, for different reasons. I’d say that was pretty good.
- Conservation and use of genetic resources of underutilized crops in the Americas – A continental analysis. Some underused crops are more underused than others, but policies don’t help any of them much.
- And this week’s theme, I’ve just realized, somewhat belatedly, is the complementarity of ex situ and in situ conservation. No, really, go back and check. And it was purely by chance too.