- Comprehensiveness of conservation of useful wild plants: An operational indicator for biodiversity and sustainable development targets. Lots to do. Lots.
- The East Asiatic region of crop plant diversity. Southwest China especially rich, with its 44 species of kiwifruit, for example.
- The Sorghum QTL Atlas: a powerful tool for trait dissection, comparative genomics and crop improvement. Maybe this will get the stuff used a bit more.
- Domestication and crop evolution of wheat and barley: Genes, genomics, and future directions. Much progress recently, but high-resolution identification of crop-wild introgressions remains a gap.
- Real-time PCR, a great tool for fast identification, sensitive detection and quantification of important plant-parasitic nematodes. Results in 3 hours.
- Gut microbiome transition across a lifestyle gradient in Himalaya. Composition (but not diversity) can change in a generation when foragers transition to agriculture.
- Are the old International Board for Plant Genetic Resources (IBPGR) base collections available through the Plant Treaty’s multilateral system of access and benefit sharing? A review. Well, about 80% of them may be.
- Speed breeding in growth chambers and glasshouses for crop breeding and model plant research. Hacking the breeders’ equation: one giant leap…
- The drivers and methodologies for exploiting wild Cajanus genome in pigeonpea breeding. Sources of high protein, CMS, self-pollination, and resistances to various biotic stresses; but may need to rethink the secondary genepool.
- Development and Application of High-Density Axiom Cajanus SNP Array with 56K SNPs to Understand the Genome Architecture of Released Cultivars and Founder Genotypes. Top 6 founders accounted for 50% of the genetic base of released cultivars. Could use more of the above, in other words.
- Genomic analysis of dingoes identifies genomic regions under reversible selection during domestication and feralization. They’re reverting to wolves, genetically speaking.
- Hongyacha, a Naturally Caffeine-Free Tea Plant from Fujian, China. Well, wild tea relative anyway.
- An EST-SSR based genetic linkage map and identification of QTLs for anthracnose disease resistance in water yam (Dioscorea alata L.). One QTL looks promising.
- Global assessment and mapping of changes in mesoscale landscapes: 1992–2015. Main changes were forest→agriculture, followed by agriculture→forest.
- Quantitative Genetics and Genomics Converge to Accelerate Forest Tree Breeding. Great potential, on the brink, just around the corner…
- Genome Editing in Trees: From Multiple Repair Pathways to Long-Term Stability. Great potential, on the brink, just around the corner…
Brainfood: Medicago sequencing, Barley GBS, Cowpea GBS, Yeast origins, Czech WTP, Seed storage, Functional phenomics, BXW control, Adoption, Dietary diversity, Modern wheat drawbacks, Maize & CC, Lekker lettuce, Wild Ipomoea sequenced, Asia crop history, Sustainable intensification
- Whole-genome landscape of Medicago truncatula symbiotic genes. There’s always something else.
- Genebank genomics highlights the diversity of a global barley collection. IPK’s, that is, and that’s 22,000 strong. Let the GWAS begin. Including for whisky-related traits, of course.
- A polyploid admixed origin of beer yeasts derived from European and Asian wine populations. And beer-related.
- Genetic diversity and population structure of a mini-core subset from the world cowpea (Vigna unguiculata (L.) Walp.) germplasm collection. There are three broadly geographic clusters, and the mini-core is representative of overall diversity, in Africa at least.
- Identification of candidate domestication‐related genes with a systematic survey of loss‐of‐function mutations. Fancy methods lead to doubling of possible domestication genes in soybean to 110.
- Social Valuation of Genebank Activities: Assessing Public Demand for Genetic Resource Conservation in the Czech Republic. Willingness to pay is $9 per sample. But this is unpacked in a guest post by Nik.
- Gene bank scheduling of seed regeneration: Interim report on a long term storage study. Maybe someone can tell me what’s new here?
- Functional phenomics: An emerging field integrating high-throughput phenotyping, physiology, and bioinformatics. Again, what exactly is new here, apart from the word pheme?
- Xanthomonas Wilt of Banana (BXW) in Central Africa: Opportunities, challenges, and pathways for citizen science and ICT-based control and prevention strategies. Technology is not enough.
- Beyond individuals: Toward a “distributed” approach to farmer decision‐making behavior. And even if it were enough, adoption is a whole ‘nother thing…
- Dietary Diversity: Implications for Obesity Prevention in Adult Populations: A Science Advisory From the American Heart Association. As currently defined, dietary diversity does not necessarily mean healthy eating.
- Modern Wheat Varieties as a Driver of the Degradation of Spanish Rainfed Mediterranean Agroecosystems throughout the 20th Century. Under traditional organic management, older varieties have similar yields to modern varieties, plus more biomass both above and below ground, making for better soils.
- Peculiarly pleasant weather for US maize. Adaptation to warmer climates accounts for 28% of yield increases since 1981. It won’t last, see below.
- Increase in crop losses to insect pests in a warming climate. Losses to insects will increase by 10 to 25% per degree Celsius of warming for wheat, rice, and maize.
- Metabolite variation in the lettuce gene pool: towards healthier crop varieties and food. Tasty lettuce is possible.
- Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement. Carotenoid biosynthesis alleles identified.
- Climate change stimulated agricultural innovation and exchange across Asia. Climate models suggest that about 3,500 years ago Central Asia and Tibet cooled, and 2,000 years ago China followed suit, in both cases leading to shifts in crops.
- Intensification for redesigned and sustainable agricultural systems. Depends on building social capital first.
Nibbles: Jackson on Vavilov, ICRAF genebank, #Imaginenopotatoes, Eye in the sky, Food system, Brazilian fruit singer, Fruit pix, Livestock data
- Mike Jackson reminisces about 50 years in plant genetic resources.
- Cracking story about taking a crack at cracking the problem of tree seeds.
- CIP asks you to imagine a world without potatoes.
- Satellites on the lookout for pests.
- The food system is broken. Or maybe it’s working just fine, to the wrong end.
- Singing about açaí.
- Pomology, illustrated.
- Livestock data, deconstructed.
Brainfood: Global taro, Gender gap, Eschatology, Cacao domestication double, Soybean epigenetics, Rice domestication, Domestication space, Botanic gardens, Agrarian care, Open seeds, Sustainable nutrition, Broadbean breeding, Resistant beans, Yam environments, Trade networks
- Conserving and Sharing Taro Genetic Resources for the Benefit of Global Taro Cultivation: A Core Contribution of the Centre for Pacific Crops and Trees. The first line of defence against Taro Leaf Blight, among other things.
- Female access to fertile land and other inputs in Zambia: why women get lower yields. Because they’re stuck with the poorer soils. I’m assuming there was some control for maize variety, but the damn thing is behind a paywall. LATER: Yeah, they controlled for hybrid vs open pollinated variety.
- Towards a dialogue of sustainable agriculture and end-times theology in the United States: insights from the historical ecology of nineteenth century millennial communes. In other news, it has become necessary to reconcile the apocalypse with sustainability.
- Population genomic analyses of the chocolate tree, Theobroma cacao L., provide insights into its domestication process. Domestication was both good and bad.
- The use and domestication of Theobroma cacao during the mid-Holocene in the upper Amazon. Archaeology says domestication in western Amazon in line with above (somewhere in Ecuador?), but earlier than thought.
- DNA methylation footprints during soybean domestication and improvement. Differentially methylated regions are particularly genetically diverse.
- Major domestication-related phenotypes in indica rice are due to loss of miRNA-mediated laccase silencing. Not so much the genes, as their regulation.
- Phylogenetic patterns and phenotypic profiles of the species of plants and mammals farmed for food. Plants and animals are different.
- Botanic Gardens Complement Agricultural Gene Bank in Collecting and Conserving Plant Genetic Diversity. 6000 taxa in 68 crop genera are in botanic gardens. Check out the rest of the special edition of Biopreservation and Biobanking on agricultural genebanks.
- Plants: Crop diversity pre‐breeding technologies as agrarian care co‐opted? Pre-breeding ignores farmers’ knowledge.
- The Open Source Seed Licence: A novel approach to safeguarding access to plant germplasm. Seeds will find a way.
- When too much isn’t enough: Does current food production meet global nutritional needs? No: grow more food and vegetables.
- Breeding and genomics status in faba bean (Vicia faba). Plenty of diversity to be still used. Pass the chianti.
- QTL Mapping of Resistance to Bean Weevil in Common Bean. Based on a cross between the susceptible Zambian landrace Solwezi and the resistant breeding line AO-1012-29-3-3A. But which Solwezi? I hope there’s a DOI in the actual paper for those who get through the paywall.
- Spatial Multivariate Cluster Analysis for Defining Target Population of Environments in West Africa for Yam Breeding. 7 mega-environments identified, but what I want to know is if any are under-represented in terms of material in the genebank.
- Economic shifts in agricultural production and trade due to climate change. Under mitigation scenarios trade networks for agricultural commodities get more distributed, and possibly therefore more stable. So that’s another reason to mitigate C emissions, you know, apart from saving the planet.
Nibbles: Protected areas, Waley dance, Edible cricket, Plant & people, Open-pollinated seed, Apple origins, Horticultural tree genomics
- Protected Planet report: The Website.
- In praise of cows.
- New edible insect turns up.
- Telling the stories of humanity’s relationship with plants.
- The beauty of open pollination.
- You’d have thought everyone would know where the apple comes from by now.
- The avocado, on the other hand…