- Genebanks for nutrition. Indeed they are.
- Hot peppers may be good for you. Genebanks alerted.
- For Aboriginal Australians, knowledge is held by the living landscape, and humans get together to animate it. Fascinating.
- Humans getting together to rescue near-extinct plants from wounded landscapes of North America.
- There’s a database of animal feeds for sub-Saharan Africa. Could do with being mashed up with genebank databases, no?
- Agriculture under communism wasn’t all that communist. At least in E. Germany. I wonder what they were fed.
- A 4000-year-old apple core found in Vienna. Any DNA though?
Yes, we have lots of banana news
There’s recently been some interesting banana germplasm collecting in Papua New Guinea. ((No, I don’t mean the Bougainville expedition, do keep up.))
The results are summarized in two articles, one in Plants evaluating methods to ensure the viability of collected seeds, and the other in Crop Science summarizing the characterization of diverse phenotypes.
We’ve included both the papers in question in past Brainfoods, but this press release, from which the above quote is taken, does a really nice job of bringing them together. It might also have added an additional recent paper on the work of the International Musa Germplasm Transit Centre (ITC), but anyway.
There’s a whole bunch of summary statistics on the ITC, and lots of useful links, on the Genebank Platform webpage. And of course Genesys has a selection of accession-level data. But the place for all your banana information needs is ProMusa.
Brainfood: Diversification, Annona, Banana genebank, Sustainable livestock, One Health, Polyploidy, Breeding pipeline, Evolutionary breeding, Seed storage, European landraces, Governance, Virgin oil, Cereal nutrition, Spinach origins, Botany apps
- Agricultural diversification promotes multiple ecosystem services without compromising yield. Meta-meta-analysis shows diversification is good for biodiversity, pollination, pest control, nutrient cycling, soil fertility, and water regulation and not bad for crop yields either.
- Holocene land and sea‐trade routes explain complex patterns of pre‐Columbian crop dispersion. Cherimoya reached the Andes by boat.
- Safeguarding and using global banana diversity: a holistic approach. 1617 banana accessions from 38 countries maintained in an in vitro collection, backed-up in cryo; over 18,000 samples distributed to researchers and farmers in 113 countries in 35 years. And that’s just the basics.
- Designing sustainable pathways for the livestock sector: the example of Atsbi, Ethiopia and Bama, Burkina Faso. It’s not just a straight choice between intensive or extensive production, stop with the dichotomies.
- Moving health to the heart of agri-food policies; mitigating risk from our food systems. It’s difficult to separate food from health; and yet…
- Genes derived from ancient polyploidy have higher genetic diversity and are associated with domestication in Brassica rapa. Agriculture depends on polyploidy.
- Genetic diversity is indispensable for plant breeding to improve crops. Plant breeding from an industry perspective, using the Brassicaceae as a case study.
- Yield, yield stability and farmers’ preferences of evolutionary populations of bread wheat: A dynamic solution to climate change. A totally different perspective to the above, using a totally different crop. Compare and contrast.
- Enhancing seed conservation in rural communities of Guatemala by implementing the dry chain concept. Cool way for farmers to save their seeds so they can do the above.
- Landrace hotspots identification in Europe. Where to implement the above.
- Innovation and the commons: lessons from the governance of genetic resources in potato breeding. This is a tricky one. Near as I can figure it, the authors are trying to say that it’s difficult to govern genetic resources apart from the tools needed to develop and use them. But hey, you have a go.
- Conservation of Native Wild Ivory-White Olives from the MEDES Islands Natural Reserve to Maintain Virgin Olive Oil Diversity. I did not have an endemic insular wild albino olive on my bingo card.
- Agri-nutrition research: Revisiting the contribution of maize and wheat to human nutrition and health. Staple cereals are more nutritious than often thought.
- On the origin and dispersal of cultivated spinach (Spinacia oleracea L.). Spinach originated more eastward than often thought.
- What plant is that? Tests of automated image recognition apps for plant identification on plants from the British flora. Botanists shouldn’t give up their day jobs.
Nibbles: Wild potatoes, Nigerian ag troubles, Livestock power, Conflict, Wild rice
- Wild spuds to the rescue.
- Won’t be much use in NW Nigeria, alas.
- Livestock might, though.
- Wait wait wait…
- Ok, start again, how about wild rice in situ then?
Mapping gaps in genebank collections, or trying to
So the original idea of this post was to document how I fed accession locality data into two new online mapping tools I had recently run across, and then maybe even mashed up the results. It didn’t quite work out that way, but I did spend quite a bit of time on trying to make it happen, so I want to get some kind of blog post out of it anyway. So here goes.
The two new tools are:
- The Global Accessibility Mapping Interactive Accessibility Tool. This enables the user to create a map showing travel time to a set of points of their choice.
- Crop-Climate Suitability Mapping. “A continuously updatable crop suitability geovisualization application for locating the fundamental climate niche of select crops across geographies and temporal scales.”
My thought was to get a bunch of localities for landraces of a crop from Genesys, plug them into the accessibility tool, and then compare the output of that with the overall suitability map for the crop in the region in question. Result: areas suitable for the crop but far from locations of current genebank accessions. That is, priorities for further collecting. Or at least one possible approach to prioritizing collecting. ((Here’s an infinitely more sophisticated approach.))
The first bit was easy enough. I got locality data on barley accessions from Yemen out of Genesys, fiddled with the CSV file a bit, uploaded it into the accessibility tool, ran it, and eventually downloaded a GeoTIFF, which you can upload into Google Earth.
The next step was not so straightforward. I was just not able to get a sensible map for barley in Yemen out of the Crop-Climate Suitability Mapping tool. And I did try. A lot. All I got was the whole of Yemen being classified as “pessimal” for barley, which can’t be right. “Max agriculture extent” was not bad, but no amount of fiddling with the parameters allowed me to produce a mad showing where barley might be expected to grow within that area. But even if I had succeeded, it was not clear to me how I could have used the results outside the confines of the tool itself. There’s no way to download the map, that I could find, apart from a screenshot like this one, which just shows that wherever there is agriculture in Yemen is abysmally bad for barley (red means “pessimal”, orange merely unsuitable).
But having invested quite a bit of time already, I decided to fall back on SPAM. The Spatial Production Allocation Model is still the go-to tool for crop suitability mapping, it seems. And the maps you can make online, such as this one for barley, are nice.
There’s not much more you can do with this, though. You can map accessions from Genesys from the same menu, though not, alas, on the same map as the suitability results. However, SPAM does also provide downloadable data for barley, which comes as part of a huge bunch of global GeoTIFFs. I uploaded that into Google Earth along with the accessibility map.
Here’s what I got.
Ok, not great, I admit. The colour from both the accessibility and SPAM results disappeared when imported in Google Earth, so now suitability is the lighter colour and accessibility the dark streaks. I’ve overlapped the layers so that if you see any light colour, that shows places which are suitable for barley but relatively inaccessible from the locations of other barley accessions (the yellow circles). Those could be your priority collecting localities, in other words.
So not great, but not bad either. At least as a conversation starter. So don’t let me down, start a conversation below…