- Identification and diversity of Y‐chromosome haplotypes in Qinghai yak populations. 2 paternal lineages but weak genetic structure among the 9 populations and 3 breeds.
- Development and characterization of Triticum turgidum–Aegilops umbellulata amphidiploids. A bridge to bread wheat.
- Variation in total root length and root diameter of wild and cultivated lentil grown under drought and re-watered conditions. Some wild species have longer total root length under drought stress than crops. No word on whether bridges needed.
- The Peril of Gene-Targeted Conservation. Only warranted when said targeted genes are important for viability and have large phenotypic effects. Suspect crop breeders (see above) may beg to differ.
- Conservation of biodiversity in the genomics era. Need to target the whole genome, I guess.
- “What Matters Is Species Richness” — High School Students’ Understanding of the Components of Biodiversity. Must try harder.
- What Conservation Does. The right things, more or less, and not at all badly, so stop complaining.
- Absence of evidence for the conservation outcomes of systematic conservation planning around the globe: a systematic map. It’s not evidence of absence of conservation outcomes, but still. Maybe should get together with the above?
- East African diploid and triploid bananas: a genetic complex transported from South-East Asia. All introduced by Austronesian people, probably via Madagascar, but no longer to be found in Asia (much).
- Molecular and Cytogenetic Study of East African Highland Banana. Focuses on one of the 4 groups discussed in the above (Mutika). All derived from maybe a single hybrid clone.
- Sources of resistance to Xanthomonas campestris pv. musacearum, the causal agent of banana Xanthomonas wilt. Why bother with the above, you ask?
- Genetic diversity of day-neutral converted landrace Gossypium hirsutum L. accessions. Eastern and western hemisphere groups, with US varieties closer to the eastern.
- Crop Domestication Alters Floral Reward Chemistry With Potential Consequences for Pollinator Health. In highbush blueberry, domestication has decreased the chemical diversity of nectar and pollen, possibly increasing infection by bee gut pathogens.
- Ancient DNA analysis of Scandinavian medieval drinking horns and the horn of the last aurochs bull. Aurochs interbred with domestic cattle way back. In other news, you can extract aurochs DNA from medieval Scandinavian drinking horns.
- The USDA cucumber (Cucumis sativus L.) collection: genetic diversity, population structure, genome-wide association studies, and core collection development. Three groups, more or less: India, E. Asia, and everything else. A third of 1200 accessions recovers 96% of variation.
- Rapid improvement of domestication traits in an orphan crop by genome editing. Tomato orthologues in groundcherry mutated for more fruits and better plant architecture.
- Domestication of wild tomato is accelerated by genome editing. Or you can do it with the actual tomato genes. As suggested a couple of years ago.
Nibbles: Transformation, Restoration, Renumeration, Validation, Mensuration, Celebration, Visualization, Diversification, Fructification, Information, Fermentation, Sustentation, Association, Migration, Transformation, Microconservation
- Lawrence Haddad on how to start transforming the food system.
- Here’s an idea: CIMMYT genebank recognized for restoring agricultural diversity in Guatemala.
- And another. Cash transfers are better than more conventional interventions for malnutrition, but they have to be real money.
- But, of course, they don’t always work. That’s one of many development myths listed in this fun Twitter thread.
- We also need metrics, sure, but the right ones, and we may already have them.
- The first ecologist remembered. That would be Humboldt.
- Terrible visualizations of the changing geography of American agriculture.
- But where are heirloom grown? Rice, say?
- And where are all the pomegranate farmers?
- I’m sure there are plenty of grape maps of France somewhere. But what’s with all these varieties? And are there more than in pomegranate?
- IUCN launches a new Red List website.
- Laos launches a sort of Red List website on traditional foods. Here it is. No word on linkages with Ark of Taste.
- Belgian lambic beer threatened by climate change. Now it’s personal.
- In Italy, the landscape needs people to keep it safe.
- Even olive landscapes, which maybe need to be more promiscuous.
- Early agricultural migrations fuelled by cheese.
- Early eggplant migrations fuelled by elephants.
- Microbes to the rescue.
Brainfood: Quinoa boom, Diet affordability, Insect boom and bust, Organic & pests, Maize agroforestry, Landraces, Wheat roots, Conservation costs, Sustainable intensification, Defences & domestication, Polyploid niches, Mexican CWR, Danish apples, Diversity proxies, Grassland nutrient hotspots
- Foods and fads: The welfare impacts of rising quinoa prices in Peru. Modest.
- Measuring the Affordability of Nutritious Diets in Africa: Price Indexes for Diet Diversity and the Cost of Nutrient Adequacy. Maybe they could try quinoa.
- Impacts of climate warming on terrestrial ectotherms across latitude. Insects are in trouble in the tropics, but will make up for it at higher latitudes, which will be really bad for crops there, 10-25% more bad.
- Evidence that organic farming promotes pest control. Something for farmers in those higher latitudes to think about.
- The global distribution of Bacillus anthracis and associated anthrax risk to humans, livestock, and wildlife. 63.8 million rural poor livestock keepers are at risk. No word on effect of climate change.
- Do open-pollinated maize varieties perform better than hybrids in agroforestry systems? Maybe in Rwanda, but in Ethiopia not so much.
- More than Yield: Ecosystem Services of Traditional versus Modern Crop Varieties Revisited. Landraces are liked for yield stability in marginal environments, and for cultural reasons.
- Root and shoot traits in parental, early and late generation Green Revolution wheats (Triticum spp.) under glasshouse conditions. Modern wheat have smaller roots.
- Standardized reporting of the costs of management interventions for biodiversity conservation. Behind a paywall, so can’t tell whether includes genebanks. But I bet it doesn’t. Tell me I’m wrong.
- Global assessment of agricultural system redesign for sustainable intensification. Apparently 30% of farms and 10% of agricultural land worldwide, which is both more and less than I would have guessed.
- Genetic homogeneity of North-African goats. The Berber breeds are different, everything else is a big mixed up mess.
- Plant domestication decreases both constitutive and induced chemical defences by direct selection against defensive traits. In cabbage, even the tissues that are not eaten are more edible than in the wild relative.
- Polyploid plants have faster rates of multivariate climatic niche evolution than their diploid relatives. Relevant for domestication?
- An Initiative for the Study and Use of Genetic Diversity of Domesticated Plants and Their Wild Relatives. In Mexico.
- Population structure, relatedness and ploidy levels in an apple gene bank revealed through genotyping-by-sequencing. There’s a lot of inter-relatedness in the Danish collection.
- Biases induced by using geography and environment to guide ex situ conservation. “Although geographic and environmental diversity have proven to be reliable predictors of allele frequency differences and ecotypic differentiation across species ranges, they appear to be poor predictors of allelic diversity per se.” At least for 3 species.
- Examining the spectra of herbarium uses and users. Herbaria mostly used by taxonomists shock.
- Ancient herders enriched and restructured African grasslands. Shit. You heard me.
Brainfood: Food as art, Maize seed, Jatropha genome, Wild camelids, Global nutrition, Price shocks, Pearl millet domestication, Yam domestication, NNL, New beer microbe, Dog coat colour, Herbarium biases, Maize N fixation
- Food as a daily art: ideas for its use as a method in development practice. Food can bring traditional and scientific knowledge together in an smorgasbord of ideas.
- Maize seed systems in different agro-ecosystems; what works and what does not work for smallholder farmers. Sure, purchasing hybrids from the formal sector seed system is gaining ground in Malawi, Zambia, and Chiapas, but not for home consumption, and only in high potential areas.
- Genome sequence of Jatropha curcas L., a non‐edible biodiesel plant, provides a resource to improve seed‐related traits. Is Jatropha even still a thing?
- Comparing genetic diversity and demographic history in co-distributed wild South American camelids. Vicuña (alpaca wild relative) display lower genetic diversity within populations than guanaco (llama) but more structure across Peru; strong bottlenecks happened at different times, but in both cases much later than domestication and before Spanish conquest.
- The Global Nutrient Database: availability of macronutrients and micronutrients in 195 countries from 1980 to 2013. Supply of micronutrients has increased during the period globally and across levels of development.
- Effects of Food Prices on Poverty: The Case of Paraguay, a Food Exporter and a Non-Fully Urbanized Country. Food price hikes are, overall, bad for everyone, but least bad for the poorest and richest.
- A western Sahara centre of domestication inferred from pearl millet genomes. Harlan’s non-centre not found. Free-to-read.
- Molecular basis of African yam domestication: analyses of selection point to root development, starch biosynthesis, and photosynthesis related genes. Domestication of wild yams was all about learning to grow in full sunlight, and it involved losing 30% of their diversity. But remember current wild yams are not all that wild.
- No net loss for people and biodiversity. How to ensure that people really are no worse off after an offset intervention.
- Identification of a novel interspecific hybrid yeast from a metagenomic open fermentation sample using Hi-C. Doesn’t work on its own, though.
- Length variations within the Merle retrotransposon of canine PMEL: correlating genotype with phenotype. Mobile DNA gets everywhere.
- Widespread sampling biases in herbaria revealed from large‐scale digitization. Blame mega-collectors.
- Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota. In aerial roots, no less.
Brainfood: Rye genus, Purple carrots, Breed conservation contracts, Livestock breeding, USDA sweetpotatoes, Apple breeding, Olive breeding, Landrace nutrition, Trade and SDG 2.5, Medicinal legumes, Tea in China, Non-rhizobia, Fungal cryo, Barcoding NUS
- Phylogeny and genetic structure in the genus Secale. The perennial species is different from the annuals, which are divided into an Asian and a non-Asia group and show all kinds of introgression.
- Consumers’ acceptance of a local landrace: the case of purple carrots. Sure, if produced locally.
- Saving the breeds: German Farmers’ preferences for Endangered Dairy Breed conservation programs. Sure, if they get paid.
- Analysing innovations among cattle smallholders to evaluate the adequacy of breeding programs. Intensification will need more than selection within the local breed. But it’s a start.
- Genetic diversity and population structure of the USDA sweetpotato (Ipomoea batatas) germplasm collection using GBSpoly. 4 clusters: Central American, North American, South American, and others.
- Updated review of potential medicinal genetic resources in the USDA, ARS, PGRCU industrial and legume crop germplasm collections. 22 species have potential.
- Apple (Malus spp.) Breeding: Present and Future. It’s bright, apparently.
- Strategies for Olive (Olea europaea L.) Breeding: Cultivated Genetic Resources and Crossbreeding. There’s an International Olive Council, and it has a Network of Germplasm Banks.
- Genetic flow among olive populations within the Mediterranean basin. Separate Syrian and Algerian genepools.
- Traditional farmers’ varieties: a valuable source of genetic variability for biofortification programs. Back to the future.
- SDG 2.5: How Policies Affecting Trade and Markets Can Help Maintain Genetic Diversity. It’s possible, but not automatic.
- Concept and protection of traditional knowledges in agricultural heritage system: a case study of Pu’er Traditional Tea Agrosystem. Based on 269 pieces of traditional knowledge, and in trouble.
- Mining alfalfa (Medicago sativa L.) nodules for salinity tolerant non-rhizobial bacteria to improve growth of alfalfa under salinity stress. They work even on their own.
- Frozen fungi: cryogenic storage is an effective method to store Fusarium cultures for the long‐term. I guess will also work on the above?
- DNA barcoding to promote social awareness and identity of neglected, underutilized plant species having valuable nutritional properties. Familiarity breeds contentment.