- Sexing up genebanks.
- Inventive wheat drought phenotyping. Want more?
- The Irish try out other Andean crops. Because the first one worked out so well.
- Peruvian cocoa goes up-market. Others might not get the chance.
- Latest batch of IDRC food security projects: African veggies, chickpeas, lentils… Meanwhile, back home in Canada…
- Some major coffee producers are probably in trouble. Will the International Multi-location Variety Trials help at all?
- Crop genomic data boffins say crop genomic data should be free. DivSeek unavailable for comment.
- The latest from Rodale on why organic is better. Well, it certainly affects microbial diversity.
- Smithsonian helps to preserve the Great American Garden through citizen science.
- Blimey, it takes 15 years to release a cranberry cultivar. That’s nothing, Kenyan canning bean breeders say.
- Expo Milano 2015 is coming, and Bioversity will be there in force.
- The olive is under threat. Always something.
- If you don’t want to eat insects, you can always feed them to your livestock.
- There’s a campaign to save small cider producers in the UK. which we can all get behind, I’m sure.
- Make your own garum. If you must.
- Asian countries to launch regional PGR network. What, again?
- An ode to figs.
- Gotta love
weedweeds. - FAO gives pastoralists a voice. Or a website, rather.
Brainfood: Biodiversity and health, Medieval cattle, African livestock sustainability, Filipino rice, Coffee breeding, Land-sparing conundrum, Scrapie resistant goats, Ass-like equid evolution, GS in livestock breeding, Eucalypt diversity & drought, Ecosystem services of organic ag
- Relationships between agrobiodiversity, dietary diversity and nutritional status in Tanzania. It’s really complicated.
- Microsatellite genotyping of medieval cattle from central Italy suggests an old origin of Chianina and Romagnola cattle. DNA from a couple of cattle breeds from central Italy shows remarkable similarities with that from thousand-old bones from an archaeological site in the same area.
- Strategies and approaches to sustainable livestock production in Sub Saharan Africa. It will depend on women.
- Strategies and initiatives on rice genetic resources conservation and research for climate change adaptation. Among the 1506 traditional rice varieties in the Philippines genebank are 3 which could be drought tolerant and 9 collected from really saline areas. They’re being sequenced for gene discovery.
- Next generation variety development for sustainable production of arabica coffee (Coffea arabica L.): a review. Local breeding, plus international networking.
- Why biodiversity declines as protected areas increase: the effect of the power of governance regimes on sustainable landscapes. Modelling shows land-sharing may outperform land-sparing in the long run. Most interesting consequence of the insights derived is that perhaps protected areas should be placed near agricultural frontiers rather than where biodiversity or cost-effectiveness highest.
- Biodiversity and selection for scrapie resistance in goats: genetic polymorphism in “Girgentana” breed in Sicily, Italy. Resistance gene more common in this weird breed than in the one that’s usually used in breeding.
- Reassessing the evolutionary history of ass-like equids: Insights from patterns of genetic variation in contemporary extant populations. I urge you to read the abstract yourselves and marvel at the author’ success in using the word ass-like the maximum possible number of times.
- Opinion paper: emerging markets, emerging strategies under the genomic revolution. Genomic selection is an organizational revolution as much as a technological one. At least in animal breeding.
- Genetic diversity of Eucalyptus camaldulensis Dehnh. following population decline in response to drought and altered hydrological regime. It stayed the same, I guess because of gene flow.
- Significance and value of non-traded ecosystem services on farmland. Value of biological control of pests and nitrogen mineralisation provided by organic agriculture of peas, beans, barley and wheat (extrapolated from 20 fields in NZ to whole of temperate zone) was greater than global costs of insecticides and fertilizers, even if only 10% of global arable area was converted to organic.
Building a European Plant Germplasm System
A couple of days ago we blogged about a study by European genebankers which recommended the establishment of a “European Plant Germplasm System” (EPGS) along the lines of the US National Plant Germplasm System (NPGS). Let’s see how far the analogy can be pushed.
Some of the key features illustrated in the diagram of the “EPGS” provided in the paper, and reproduced in our post, are: active germplasm collections, a central seed storage laboratory, a system-wide information system and a plant germplasm committee. There are some interesting differences between the European and US versions of each of these. The constituent European germplasm collections, for example, would be the national collections, which tend to have a very wide range of species; whereas in the US some at least of the individual germplasm repositories are fairly focused on a crop or group of similar crops. That makes for efficiencies. Or would all the “small grains” in Europe end up in one national genebank, and all the apples in another, as in the US?
Another difference, as we discussed in the previous post, is the nature of that European plant germplasm committee. There is supposed to be only one of these in Europe, whereas in the US there is one per crop, to provide guidance and advice from germplasm users to the crop curator. That to me makes more sense.
As for information systems, Eurisco is not at the moment comparable to GRIN. The NPGS uses GRIN (GRIN-Global in the near future) to both manage workflows within the genebank and make some of the resulting data available for searching on the internet. Eurisco does only the latter at the moment (and, incidentally, like GRIN, serves its data up to Genesys). But then I expect the individual European genebanks are quite happy with their various data management systems and don’t necessarily need to share a single, standardized system. Or do they?
Perhaps the biggest difference, however, is with the central seed storage laboratory. There is at present no European Ft Collins at all to provide safety duplication of seed accessions. It would have to be built from scratch. Or perhaps one of the bigger national genebanks could suck in safety duplicates and morph into a regional genebank? But is a single central repository really necessary at all? What if, instead, you had different national genebanks taking regional responsibility for safety duplication of different crops? This would not be a new idea by any means, though I don’t think it’s ever been implemented anywhere in the world. Might it be an option in Europe?
Then there’s the stuff that’s not on the diagram. Take coordination mechanisms. The NPGS has biennial face-to-face meetings of all genebank curators, with teleconferences in the “off-years.” Plus there’s national–level coordination by the ARS Office of National Programs. The National Plant Germplasm Coordinating Committee coordinates and communicates information among federal, state and other funding entities. A related issue is administrative structure. NPGS genebanks are budgeted in a ARS Research Project, which is funded by an annual Congressional appropriation. This in turn contributes to ARS National Program 301 (Plant Genetic Resources, Genomes, and Genetic Improvement). Every five years, each National Program and its constituent Research Projects undergo external reviews. After that, each Research Project writes a new Project Plan for the next five years for review. What would European coordination and administration on crop genetic resources look like? Some is already provided by the European Cooperative Programme for Plant Genetic Resources (ECPGR), of course. Would ECPGR’s processes and structures — not to mention funding — be sufficient for a European Plant Germplasm System?
So. I guess the bottom line is that it’s easy to say that it would be nice to have a European version of the US National Plant Germplasm System. But then you start to drill down into what that would actually mean, and lots of options open up at each turn. And, at each turn, whether it makes sense to do it in Europe exactly like they do it in the US will, as they say, depend.
Nibbles: Easy Eleusine, Ethical down, Bison pix, Svalbard pix, Salinity costs, Nutrition conference, Veggies for nutrition
- Finger millet is the future in Zimbabwe.
- Conventional down has a problem. I do prefer unconventional down myself.
- They had National Bison Day and nobody told us.
- Epic’s Excellent Svalbard Adventure.
- Start planning for next year’s cucurbit conference.
- Soil salinity sucks.
- On the other hand, this nutrition conference is in only a couple of weeks. And there will be radio.
- Not that these Indonesian ladies will need that.
Brainfood: Filipino rice synonyms, Jatropha breeding, Polish oats, Amazonian peppers, Wild lentils, Indian pigeonpea, Russian peas, Pulse markers, Wild pollinators, Phenotyping platforms, Almonds & peaches, Cerrado roads, Arboreta conservation
- Multiplex SSR-PCR analysis of genetic diversity and redundancy in the Philippine rice (Oryza sativa L.) germplasm collection. 427 rice accessions in the national collection with similar names resolve to about 30 unique profiles. I think. The abstract is a little hard to follow, and that’s all I have access to.
- Quantitative genetic parameters of agronomic and quality traits in a global germplasm collection reveal excellent breeding perspectives for Jatropha curcas L. 375 genotypes, 7 locations and 3 years get you quite enough data to plan a decent breeding programme.
- Studies on genetic variation within old Polish cultivars of common oat. Forward into the past.
- Morphoagronomic peppers no gender pungent Capsicum spp. Amazonia. Actually nothing to do with gender. That’s a mis-translation of “genus,” if you can believe it. Paper basically says that Amazonian peppers are really variable, which is not as interesting as it might have been.
- Global Wild Annual Lens Collection: A Potential Resource for Lentil Genetic Base Broadening and Yield Enhancement. The core collection of wild annuals (which is actually a somewhat novel concept) comes mainly from Turkey and Syria, and it’s got diversity that’s not in the cultigen.
- Pigeon pea Genetic Resources and Its Utilization in India, Current Status and Future Prospects. Indian genebank evaluates the ICRISAT core and mini-core. Then does some mutation breeding :)
- Molecular genetic diversity of the pea (Pisum sativum L.) from the Vavilov Research Institute collection detected by the AFLP analysis. Molecular data does not correspond with subspecies nor ecogeographic groupings. Back to the drawing board.
- Characterization of microsatellite markers, their transferability to orphan legumes and use in determination of genetic diversity among chickpea (Cicer arietinum L.) cultivars. Chickpea SSRs are ok for other, less studied, crops too.
- From research to action: enhancing crop yield through wild pollinators. Go wild.
- Integration of phenotyping and genetic platforms for a better understanding of wheat performance under drought. You really need managed environment facilities. Didn’t a paper in Brainfood last week say what you needed was a network of field sites? I guess you need both.
- Wild almonds gone wild: revisiting Darwin’s statement on the origin of peaches. He was not entirely wrong.
- The role of roadsides in conserving Cerrado plant diversity. 70% of species is not bad, I guess. No word on whether that includes wild peanuts, but I suspect yes.
- Do living ex situ collections capture the genetic variation of wild populations? A molecular analysis of two relict tree species, Zelkova abelica and Zelkova carpinifolia. Yes and no. But this is in botanic gardens and arboreta, what about seedbanks? The cerrado people want to know…