- The potential effect of megafaunal extinctions on modern conservation of horse chestnut Aesculus hippocastanum. The extinction of large seed-dispersing mammals (i.e. elephants) may explain why horse chestnut failed to recolonise Europe after the last ice age, pointing to assisted migration as a conservation option.
- Mapping melliferous tree species in Kenya via one-class classification with hyperspectral unsupervised domain adaptation. Hyperspectral remote imagery and fancy maths can accurately identify and locate Kenya’s honey trees, potentially supporting both conservation and beekeeping. Brave new world. Elephants not involved.
- Everyday agroecologies in the Mixteca Alta, Mexico: gendered knowledge and practices in homegarden agroecosystem management. Women’s knowledge helps sustain homegardens as reservoirs of agrobiodiversity and climate-adaptation spaces, embedding many interesting wild and cultivated trees, along with much else, in wider systems of knowledge and resource management.
- Integrative DNA barcoding and multimethod species delimitation reveal marker performance in the genus Ficus L. (Moraceae). Takes on the old taxonomic problem of where one fig species ends and another begins. Ficus is an especially resonant group for today’s tree-themed roundup: taxonomically challenging, ecologically consequential, economically and culturally important, tied to famously specialised pollination relationships. “Integrative” means the usefulness of a DNA marker must be tested against other evidence and against the particular boundaries one is trying to recognise.
- Chloroplast phylogeographic analysis guides the source tracing and conservation strategies of the endangered Magnolia kwangsiensis Moving down one biodiversity level, mapping maternal genetic structure helps identify appropriate seed sources for conservation and restoration, rather than treating all populations as genetically equivalent. Next comes feeding the seeds to passing elephants.
- Development of a simple and easily interpretable cultivar identification system using 18 insertion/deletion (InDel) markers in Japanese pummelo (Citrus maxima). Really simple markers can identify Japanese pummelo cultivars, and even reveal clues about their parentage.
- К 100-летию отдела генетических ресурсов плодовых культур ВИР. (On the 100th Anniversary of the Fruit Crop Genetic Resources Department of VIR). A century-long institutional case study in tree (ok, and shrub) conservation at scale: some 19,000 fruit, nut and berry accessions now held in field genebanks across ten Russian field stations, each sited in the climate zone that suits what it conserves.
- Cryopreservation strategies for trees: Leveraging organogenesis and somatic embryogenesis for effective conservation. Combining ultra-low-temperature storage with making shoots or roots from an explant tissue and making embryo-like structures from non-reproductive cells offers ways to emulate seeds when the real things cannot be easily stored in the usual way, field genebanks cannot be guaranteed to last 100 years, and there are no elephants around.
Brainfood: Easter Island coffee, Sword bean, Sweetpotato names, Colombian potatoes, Nut grass, Market access, Pollinators, Seed microorganisms
- An insular in situ Coffea arabica resource from Rapa Nui (Easter Island): SSR uniformity and biochemical evaluation of material consistent with the Typica lineage. Coffee growing on remote Rapa Nui appears to represent a remarkably uniform population closely related to the historic Typica lineage. Not diverse doesn’t necessarily mean not interesting.
- Farmer knowledge, management practices, and seed morphological diversity of sword bean (Canavalia gladiata) in Côte d’Ivoire. Growers recognize, manage and maintain morphological variation in sword bean, a legume that could be more utilized.
- Consistency of farmer-named sweet potato cultivars and their physicochemical and color differentiation within a production region. While local naming systems are generally meaningful, they don’t always map perfectly onto measurable physicochemical and colour traits.
- Harnessing the Genetic Diversity of the Colombian Central Collection of Potatoes to Dissect Pigmentation Genomics in Andigenum Landraces. Colombia’s collection helps explain colourful potatoes.
- Novel food ingredients from Cyperus rotundus: an ancient famine food and the world’s most pernicious weed comes back to the table. One of the world’s most notorious weeds may also be an overlooked food crop, and a potential source of novel food ingredients. An opportunity weed?
- Market remoteness and the production–diet association in smallholder food systems: Evidence from rural Nepal. Growing a diverse range of crops does not always translate into a more diverse diet. In Nepal, the relationship depends strongly on market access, highlighting the importance of infrastructure alongside agricultural diversification. Ok, forget the nut grass then, at least far from markets.
- Pollinators support the nutrition and income of vulnerable communities. Pollinator diversity makes important contributions to both dietary quality and household incomes among vulnerable communities.
- Seed ageing increases the influence of native microorganisms on germination. As seeds deteriorate, their naturally associated microorganisms play an increasingly important role in determining whether they successfully germinate. Of course microorganism diversity had to get a look-in too.
Brainfood: Unusual data edition
- The Broad Spectrum Species: Plant Use and Processing as Deep Time Adaptations. Hundreds of plant species, many now forgotten, show up in archaeological assemblages stretching back tens of thousands of years. Exploiting an astonishing diversity of plants was a fundamental human adaptation long before agriculture. And the data was kinda always there.
- Evaluating cultivars for pollinator gardens. Some ornamental cultivars attract more pollinators than the wild plants they were bred from. The relationship between genetic modification through breeding and ecological function is not always straightforward. And I now want to see the descriptor “pollinator attractiveness” in evaluation datasets.
- Chemotypic Diversity and Integrated Metabolic Profiling of Myrtle (Myrtus communis L.) from Mediterranean Turkey. Dozens of different chemical compounds vary dramatically among individual myrtle plants that look much the same to the naked eye.
- Essential oil composition and ethnobotanical survey of male and female Juniperus seravschanica Kom. (Cupressaceae) in Iran. Traditional knowledge and chemical profiling show that juniper male shoots, female shoots and cones each produce distinct blends of essential oils, exposing a surprising layer of sex-linked diversity within a single species.
- Earth Metabolome and Digital Botanical Gardens Initiatives: Chemodiversity Knowledge for Biodiversity Conservation. Millions of plant-produced molecules remain undocumented, forming an invisible dimension of biodiversity. We need global digital infrastructures to catalogue this vast reservoir of chemodiversity before it disappears. Of course we do.
- Herbaria Provide a Valuable Resource for Obtaining Informative mRNA. Decades-old herbarium specimens still contain usable messenger RNA, opening the door to studying historical patterns of gene expression from preserved plant collections.
- The Politics of Open Infrastructures: Power, Governance, and Justice in Digital Knowledge Practices. Data infrastructures may be open, but control over them often is not. And that probably goes even more for the unusual sorts of data represented by the above papers than for the crop diversity data we normally deal with here.
We need diverse farms, and genebanks can help
A LinkedIn post by CGIAR stalwart Dr Carlo Fadda convinced me I should give a bit more exposure to a recent paper than the brief Brainfood entry I wrote about it a few weeks ago. The paper is Long-term agricultural diversification increases financial profitability, biodiversity, and ecosystem services: a second-order meta-analysis. Its authors are Estelle Raveloaritiana and Thomas Cherico Wanger, and it was published in Nature Communications this past January.
In that Brainfood, I tried to bring together in a logical thread various studies on different aspects of farm diversity and its benefits. In particular, its effects on diet diversity, and hence health outcomes.
But better diets and human health are not the only pluses of diverse farms, and the paper in question in fact suggests that intercropping, organic farming, and other diversification strategies also increase incomes, biodiversity, pollination, soil quality, and carbon sequestration significantly over 20 years. With, importantly, no downward hit on crop yields. So going diverse — organic, if you will — has many advantages that are not overall associated with a yield tradeoff. And that’s from a meta-analysis of 184 meta-analyses and 120 years of data, so it’s a pretty robust result.
As Dr Fadda points out in his excellent summary of the paper, good evidence that diverse — including agrobiodiverse — farms are good for farmers, consumers and the planet is clearly there. The challenge is to find the institutional will to act on it.
I’d like to add that genebanks around the world are ready, willing and able to do just that. It’s literally their job, or at least a big part of it. I hope they are given the chance — and the resources — to do it.
Brainfood: Restoration edition
- Addressing critiques refines global estimates of reforestation potential for climate change mitigation. Better mapping shows there is less land available for reforestation than we thought, and there are limited opportunities for providing multiple benefits. Still, that’s an area the size of Mexico, and worth trying to get it right.
- Genomic approaches to accelerate American chestnut restoration. The American chestnut people seem to be getting it right.
- A native seed bank is restoring land in Canada’s north. Native people — and their genebanks — can help you get it right.
- Controlled Pollination and Reproductive Strategies in Coconut: A Framework for Farmer-Led Breeding, Seednut Production, and In Situ Conservation. Farmers can be helped to get it right.
- Dehulling the secret of the germination of crop wild relatives of Cenchrus, Digitaria, Echinochloa, Setaria and Urochloa. You need information on germination breaking to get it right. In the US Midwest, for example.
- How can Brazilian legislation on native seeds advance based on good practices of restoration in other countries? Not to mention the right policies.