- Modern maize varieties going local in the semi-arid zone in Tanzania. OPVs from the 80s are creolizing still, and that’s a good thing.
- Traditional Knowledge Systems, International Law and National Challenges: Marginalization or Emancipation? Well, it looks like it’s the former, but should be the latter. ‘Twas ever thus.
- Valuing insurance services emerging from a gene bank: The case of the Greek Gene Bank. Benefits are greater than costs. Phew.
- Banana genotype composition along the Uganda-Democratic Republic of Congo border: a gene pool mix for plantain and highland bananas. You can still find new stuff. And get funding to look for it, clearly.
- Relationships between the Weedy Amaranthus hybridus (Amaranthaceae) and the Grain Amaranths. Multiple domestications? And why not.
- Genetic Diversity Analysis of Some Ethiopian Specialty Coffee (Coffea arabica L.) Germplasm Accessions Based on Morphological Traits. As ever, useful variation was found. We await its arrival in our morning cup.
- Genetic diversity of Dacryodes buettneri (Engl.) H.J. Lam (Burseraceae), a timber tree in Central Africa. There is some. It could be important, yada yada.
- Malus sieversii: A Diverse Central Asian Apple Species in the USDA-ARS National Plant Germplasm System. The infra-specific taxa may not hold up.
- Exploiting Genomic Resources for Efficient Conservation and Use of Chickpea, Groundnut, and Pigeonpea Collections for Crop Improvement. It’s so close, these guys can taste it. When will we?
- Is genetic information a commons? Maybe it should be.
- Genetic structure and gene flow in Beta vulgaris subspecies maritima along the Atlantic coast of France. The latitudinal cline that wasn’t.
- Restoration of degraded agricultural terraces: Rebuilding landscape structure and process. Restoration is not enough, you need continuous management thereafter. Probably applies to the agricultural biodiversity too, when you think about it.
- Agro-biodiversity in rice–wheat-based agroecosystems of eastern Uttar Pradesh, India: implications for conservation and sustainable management. Resource-poor farmers are better at agrobiodiversity conservation than rich ones. ‘Twas ever thus.
Nibbles: ICRISAT award, CGIAR funding, Chinese medicine, Gut bacteria, Bee research, Sri Lankan law, Wolf Prize, Field Guides, Tapa exhibition, GFFA2014
- Today in dodgy journalism, part 1: ICRISAT gets a new mandate crop? What was the picture editor thinking. And smoking.
- Today in dodgy journalism, part 2: Two typos in the obsolete name of the CGIAR.
- Dissecting Chinese traditional medicine. Or would that be puncturing?
- Hunter gatherers have special gut bacteria.
- Bees: “That’s the beauty of the research. Because we’re still short on info, everything’s worth knowing about.”
- Maple syrup tasting. Nice gig if you can get it.
- Activist objects to proposed new seed law in Sri Lanka.
- UC Davis wheat geneticist Jorge Dubcovsky wins 2014 Wolf Prize in Agriculture. Congrats.
- Sandy Knapp on what she does all day.
- The future of field guides. Yes, they have one.
- Tapa cloth, in Cologne of all places. Don’t think there were any from Palau, though.
- Abschlusskommuniqué of the Global Forum on Food and Agriculture 2014 supports conservation and use of agricultural biodiversity. Phew.
Nibbles: Rice show, Central Asian forests, Research archives, Opium, Data stuff, Indian seeds, Ag expansion
- Rice symposium wows Hong Kong.
- Fruits and nuts of Kyrgyzstan.
- Rothamstead’s archives look totally cool.
- One does wonder whether Afghanistan could learn something from Colorado.
- When did continued collaboration become news, CIAT?
- Cherokee continue to save seeds.
- Agricultural expansion a continuing a bad thing for nature.
Filling the gaps in Lacunas
A paper in Biodiversity and Conservation caught my eye: “Lacunas: a web interface to identify plant knowledge gaps to support informed decision-making.” 1 I knew that Brazilian biodiversity researchers had been working hard on bringing their data together, and this sounded like the information was now ready to be put to some use:
SpeciesLink’s thematic network, INCT-Virtual Herbarium of Plants and Fungi and the List of Species of the Brazilian Flora, are used as primary data sources to develop Lacunas, an information system with a public web interface that generates detailed reports of the status of plant species occurrence data. Lacunas also integrates information about endemism, conservation status, and collecting efforts over time.
I couldn’t resist doing a quick roadtest of Lacunas, of course. It’s available in both Portuguese and English, and it has a simple, intuitive interface, so it wasn’t a chore. Naturally I selected a crop wild relative: Oryza grandiglumis (Döll) Prod.
You get a nice map. And a bunch of tables summarizing various statistics (both for the exact species name and for phonetically similar species names, which is a nice touch):
- Number of records per year collected
- Total number of records available in different herbaria in the speciesLink network
- Total number of records available in the speciesLink network by georeferencing status
- Total number of records available in the speciesLink network with distinct geographic coordinates
I grabbed a screenshot of one of the tables, because that was the only way I could see to save the results, and I thought I might blog about Lacunas one day. It was a pity about that saving thing, though, because the statistics the portal provides are genuinely useful in giving an idea of the quality and quantity of the data we have on different species in Brazil. For example, for our wild rice there are 31 records in all, but only 4 have original georeferences. Fortunately, for 15 of those that don’t have original latitude and longitude coordinates, it was possible to infer georeferences from other associated data. But that still leaves a significant number of herbarium specimens which cannot be used in mapping the distribution of the species. Anyway, I left a comment to that effect on the website. Then I moved on to other stuff, and the blogging got pushed down the to-do list, what with one thing and another.
Imagine my surprise then when I got notification of a fix within a couple of days. A fix which allows me to link to a results page, rather than include that clunky screengrab here. And imagine my further surprise when the guy who provided the fix turned out to be an old friend. Small world. Anyway, thanks to Sidnei for the help, and the chat.
Now, it would be great to compare the Lacunas data with those in the Crop Wild Relatives Global Atlas. But first I need to convince the developers of that incredible resource to make sharing results a little easier.
Nibbles: Kangkong, Fun labwork, Breadfruit beer, Saving juniper, Green Week
- Ipomoea aquatica in the news.
- DNA extraction made fun.
- Samoa launches breadfruit beer.
- Gin maker protects his livelihood.
- The Treaty goes to Green Week.