Chinese genebank in the top 10

The Chinese Academy of Science and Chinese Academy of Engineering voted for the country’s top 10 scientific achievements of 2007, and guess what? In at number 9 is the establishment of a genebank at the Kunming Institute of Botany.

After its completion, the resource bank will include a seed bank, vitro plant germplasm resource bank, DNA bank, and microbial seed bank. It will collect and preserve 190,000 copies (strains) of 19,000 varieties of germplasm resources.

The last genebank that got such press was you know what. No, wait, here’s another! Are genebanks the new black or something?

More to maize evolution than selection

Our thanks to Hannes Dempewolf for this guest post.

ResearchBlogging.org What forces drive maize evolution and what factors contribute to the generation of maize agrobiodiversity? This question has been the focus of a recent study, published in PNAS. ((Dyer, G.A., Taylor, J.E. (2008). A crop population perspective on maize seed systems in Mexico. Proceedings of the National Academy of Sciences, 105(2), 470-475. DOI: 10.1073/pnas.0706321105))

Contrary to the popular opinion that maize diversity at present is largely a result of artificial selection on local germplasm, the authors call for careful consideration of the ‘larger social context of maize evolution’ and explore the implications of ‘farmer-led selection’ on maize diversity. Using a theoretical approach, underpinned with some empirical data, they investigate the interplay between farmer-led selection and informal seed systems. This can result in the spread of varieties that are not necessarily ones of superior agronomic properties, but are favoured due to other factors, such as superior seed supply mechanisms:

…A frequent supplier of seed might be a farmer whose seed is faithful to a type. His seed line will be well represented locally or even fixed… Another farmer that keeps a stock of maize might be known as a sure supplier of seed when others are lacking. His seed might not be preferable to others’ but might still become locally predominant if the seed population is small. If the population is large, the demographic outcome depends not only on the rate at which he gives out seed but also on how long he keeps it.

In the context of their discussion of seed replacement, they correctly recognize that

High revenue is of less concern to subsistence farmers, who deal with a larger set of issues and overwhelmingly prefer landraces…New seed does not always perform well, especially nonlocal types acquired through informal seed systems. Farmers test seed and discard ill-adapted and inferior types. Most introduced seed is replaced after its first year, more than twice the rate of local seed.

However, introduced germplasm which has not been discarded might introgress into local seed stocks and help to maintain diversity: “When more variation within a locality is lost than created, an external source is required to maintain diversity… It is unlikely that introduced seed is displacing local types systematically.” This is because most introduced seed is not kept true to type but hybridizes with local landraces. What the prevalence of hybridization means for the genetic makeup of local landrace varieties is still unclear, but this question has received considerable attention lately, especially in the context of GMO risk assessments. ((Soleri D, Cleveland DA, & Aragón Cuevas F (2006) Transgenic crops and crop varietal diversity: The case of maize in Mexico. BioScience. 56:503–514.))

The view that, once markets are well developed, farmers shift to adopting improved varieties and hence cease to maintain diversity seems not to hold true in the case of maize in Mexico. There doesn’t seem a loss of diversity even in well developed markets. Diversity at the local level might instead be the result of individual farmer’s unintended actions, as described above.

Further contemplating the role of farmers in maize evolution, the authors suggest:

Farmers’ main goal is appropriating value, whether economic, cultural, or ritual. Whereas some might achieve this through improvement of local seed stocks, others might prefer to keep these stocks unchanged, defying our conceptions of improvement. Others may find it optimal to replace those stocks. It does not follow that seed improvement and conservation traditionally have been performed by farmers specialized as seed curators. Unlike modern maize farmers and breeders who specialize in distinct tasks, most Mexican farmers engage in seed improvement, diffusion, and farming simultaneously. Although individual management decisions have a specific intent (i.e., to preserve or replace seed), it is the sum of farmers’ actions that drives changes in maize populations. These actions can have unintentional albeit predictable effects on the metapopulation dynamics of maize.

One limitation of their study, as the authors acknowledge, is their assessment of the system at one single point in time. They suggest that even after major disruptions of the seed systems, such as catastrophic weather events, normal dynamics are bound to return after seed diffusion through government and relief agencies has ceased. Although these dynamics might indeed return, it would be interesting to see how the genetic makeup of the maize genepool changes in response to human intervention on such dramatic scales.

Social aspects of crop evolution, although undeniably of great importance, have received only limited attention by many students of evolutionary theory. One can only hope that papers like this spark the debate and contribute to a more rigorous scientific exploration of these complex interactions between social factors and crop population genetics.

It should be interesting to see how demographic modelling attempts on the evolution of crops other than maize are taking into account these factors. One could well imagine that this might lead to a major change in the way crop evolution is understood by many researchers.

Botanical blogging

From Ian Ramjohn at Further Thoughts comes news of a new blog carnival on things botanical. It is called Berry Go Round and it is being launched by Laurent at Seeds Aside. The deadline is the 25th of each month. Sounds like a great idea, especially if cultivated plants are going to be covered as well as the things you find in rain forests etc. So send your stuff in, and visit.

South Africa turning its back on local greens?

Timbuktu Chronicles pointed me to an interesting allAfrica feature on the organic vegetable revolution sweeping around the edges of Cape Town under the leadership of some formidable grandmothers. Great that such a community-based movement is taking off and making a difference, of course. But it was a bit disappointing for me not to see much evidence in the text and photos that indigenous African vegetables are included in the mix. I know there are dedicated people promoting this neglected agrobiodiversity in South Africa. I’ve worked with some of them. Local leafy greens have become mainstream in countries like Kenya in the past few years: you can buy them nicely packaged in supermarkets now, which was certainly not the case when I lived there in the mid-90s. Is that not happening in South Africa? If not, why not? I hope someone out there can tell us.

Can’t stomach golden rice? Get your teeth into golden maize!

ResearchBlogging.orgVitamin A deficiency causes eye disease in 40 million children each year and places another 200 million or thereabouts at risk for other health problems. In sub-Saharan Africa and Latin America, between 17% and 30% of children under the age of 5 suffer vitamin A deficiency. Simple solution: give them more vitamin A. But how?

The poorest regions, which stand to benefit most, often do not have the infrastructure to deliver vitamin supplements, either directly or in fortified foods. Diversifying the diet is dismissed out of hand. ((Full disclosure: I don’t myself buy the reasons given for not doing more to diversify diet, but this is not the place for that argument. This is: Johns, T. & Eyzaguirre, P. B. (2007). Biofortification, biodiversity and diet: A search for complementary applications against poverty and malnutrition. Food Policy, 32(1), 1-24.)) So the technical types turn to plant breeding, and in particular the notion of biofortified foods, whereby staple crops are selected to contain higher levels of micronutrients. It was this approach that gave the world Golden Rice, by shifting one of the enzymes in the carotenoid synthesis pathway from daffodil to rice.

An ungrateful world still has not accepted golden rice as the saviour of blind little children, but the technical types have not stopped working. In the latest Science ((Harjes, C.E., Rocheford, T.R., Bai, L., Brutnell, T.P., Kandianis, C.B., Sowinski, S.G., Stapleton, A.E., Vallabhaneni, R., Williams, M., Wurtzel, E.T., Yan, J., Buckler, E.S. (2008). Natural Genetic Variation in Lycopene Epsilon Cyclase Tapped for Maize Biofortification. Science, 319(5861), 330-333. DOI: 10.1126/science.1150255)) a large team led by Edward Buckler at Cornell University, reports on a different approach to biofortification.
Harjes2Hr

So what other staples are there, preferably ones that might already contain the genes to make vitamin A precursors? Step forward maize, some varieties of which have yellow and even golden orange kernels. It is not enough, however, simply to look at the maize kernels and score them on some scale from pale yellow to deep orange. The reason is that not all carotenoids are created equal. Beta carotene is the precursor of choice, because it contains two of the necessary chemical rings to make vitamin A. Shade of yellow correlates very poorly with total beta-carotene. But all this is detail above and beyond the call of duty. The point is that maize varieties display enormous variability both in total carotenes and in the proportion of beta carotene.

Maize varieties are also hugely genetically diverse. In fact, the differences between two maize varieties is considerably greater than the difference between humans and chimpanzees. Buckler’s group took the known variability in maize kernel colour and asked whether genetic differences were associated with the carotene profile of the variety. They were. The gene for one particular enzyme — lycopene epsilon cyclase — has a large effect on the provitamin A carotenoids.

There’s more in the full paper (which requires a subscription), but one reason that this could be an important result is that it is reasonably easy for others to make use of it. Genetic markers for the favourable versions of the crucial gene make it possible for breeders to look for the potential in any varieties they have that are already adapted to the conditions for which they are breeding. The favourable type is reasonably widespread, so finding parents for crosses should be reasonably easy. Analyzing carotenoid compounds is expensive and difficult, but scoring the target gene is not only about 1000 times cheaper, it is also well within the capabilities of those developing countries that need more vitamin A.

The contrast with Golden Rice couldn’t be greater. That is a proprietary technology that has graciously been made available to those who have the expertise to make use of it. This approach to a nutritionally-improved maize should be much simpler to put to work. Information needed for the DNA analysis is being made freely available, as are inbred maize lines that could make it easier for breeders worldwide. So things look good for biofortified maize, at least technically.

There’s just one remaining little problem — will people eat yellow maize, even if they know it is good for them? Changing human feeding behaviour can be so much harder than changing the food they eat.

Stop press: Prefer wheat to maize or rice? Golden wheat comes a step closer too, with a paper in Euphytica. Italian and Spanish wheat breeders transferred nuclei from wheat into cells from wild barley and from wild wheat relatives. Wheat wild relatives increased the amount of lutein, another carotenoid.