Genotyping Support Service

The CGIAR’s Generation Challenge Programme‘s mission is

To use advanced genomics science and plant genetic diversity to overcome complex agricultural bottlenecks that condemn millions of the world’s neediest people to a future of poverty and hunger

They’ve just announced a new service: the Genotyping Support Service. What will GSS do?

Here’s a sample of what our latest service offers: assessing proposals, hiring genotyping services from the best providers, taking care of the administrative hassles, ensuring the generation of high-quality data and training participating researchers to interpret and work with the data to optimise outputs. In this way, researchers get to use the technology right away, while also learning how to get the greatest mileage out of the technology, thus creating local capacity. As such, GSS contributes to GCP’s effort to support and motivate plant breeding ‘champions’ in developing regions.

The galactagogous flicker

So I’ve learnt a new word today: galactagogue, a substance that induces lactation. I came across it in the title of a paper ((Steve Froemming. Traditional use of the Andean flicker (Colaptes rupicola) as a galactagogue in the Peruvian Andes. Journal of Ethnobiology and Ethnomedicine 2006, 2:23)) in the Journal of Ethnobiology and Ethnomedicine, which seems to be admirably open access. The substance in question is the dried carcass of a bird called the Andean Flicker:

The bird’s use as a galactagogue appears to be motivated by both metaphorical associations and its perceived efficacy, and conceptually blends human and animal healthcare domains.

It’s really fascinating stuff. The paper has a list of Andean galactagogues, which includes many preparations derived from crops. Various wild plants and herbs are also used in this way in Europe, and some of the Andean remedies are likely to have been introduced in the 16th century, while others are native to the region. The flicker seems to be a pre-Colombian practice.

More on iron

As coincidence would have it, just a few days after Jeremy blogged about iron deficiency and what could be done about it, Dienekes’ Anthropology Blog flagged a paper on the diversity that exists among human populations in their predisposition to this problem. More specifically, the paper is about hemochromatosis ((Christopher Naugler. Hemochromatosis: A Neolithic adaptation to cereal grain diets. Medical hypotheses. 2007/08/10.)), an hereditary disorder that causes body tissues like the liver to absorb and store more iron than “normal.”

The hypothesis advanced by the author is that the condition arose in Neolithic farming communities as an adaptation to the lower levels of iron in a cereals-based diet as the shift from more iron-rich hunter-gatherer diets accelerated. Highlighting the complexity of nutritional issues, however, is the fact that prevalence of the guilty allele is lower in the Mediterranean and Near Eastern than in northern European agrarian regions, possibly because of the higher dietary intake of vitamin C down south — vitamin C assists in iron uptake. Such interactions are one reason why nutritional silver bullets are unlikely to exist.

Frankia and Alnus

There’s a lengthy review of an interesting-sounding book — People and Forests: Yunnan Swidden Agriculture in Human-Ecological Perspective ((By Yin Shaoting, professor of anthropology at Yunnan University in Kunming)) — in the latest Agriculture, Ecosystems and Environment (though the book seems to have been published in 2001). You do need a subscription, but that turned out to be a blessing in disguise, because in an effort to get around the problem I did some googling, and that not only revealed a very similar review (I know because I had access to the AEE piece at work) by the same person ((Prof. Harold Brookfield of the Australian National University)). It also led me to a resource I hadn’t come across before: People, Land Management and Ecosystem Conservation (PLEC) News and Views.

The March 2004 issue, which includes the book review, is devoted to “agrodiversity.” Here’s an excerpt from the introduction, by Miguel Pinedo-Vasquez, PLEC Scientific Coordinator (at the time), which certainly struck a chord:

Smallholder agrodiversity strategies have proved to be effective in dealing with widespread declines in the value of agricultural products, yet they continue to be underutilized by most programmes that aim to reduce rural poverty, environmental degradation, erosion of biological diversity, and other problems affecting rural communities.

Here’s more about PLEC from the website of the Department of Anthropology of the Australian National University:

PLEC is a global network, set up by the United Nations University in 1992. From 1998 until 2002 it was funded by the GEF through UNEP. It brings together over 200 professionals, including more than 130 scientists and researchers, together with 190 skilled expert farmers, and 180 undergraduate and graduate students. PLEC members work out of 65 institutions in Brazil, China, Ghana, Guinea, Jamaica, Kenya, Mexico, Papua New Guinea, Peru, Thailand, Tanzania, Uganda, Britain, the United States and Australia. From 1992 until 2002 it was coordinated scientifically by Em. Prof. Harold Brookfield, who is now Senior Adviser.

Conservation through agriculture underpins PLEC’s approach to conserving and utilising biological diversity. Most biodiversity projects relate to protected areas or crop plants alone. PLEC is unique still in its strong and pervading management approach to biodiversity in the context of the livelihoods and social organization of smallholder farmers. Through generations of innovation and experiment, they have nurtured a great diversity of plants and animals, both wild or domesticated, and accumulated rich knowledge of the managed biodiversity.

PLEC also has its own website, where you can subscribe to an electronic list.

Anyway, back to the book about swidden cultivation in Yunnan which started all this. One of the reasons the review caught my attention was the mention of the use of Alnus nepalensis in local agroforestry systems, and in particular the description of that tree as a nitrogen fixer. I had totally forgotten about the phenomenon of “alder-type” actinorhizal symbiosis between some plants and fungi of the genus Frankia. Fungi are agricultural biodiversity too!

Dragon’s blood set to dry up

Having been involved in the botanical exploration of the Indian Ocean island of Socotra back in the early 90s, and also — more recently — having done some ecological niche modeling, I was fascinated to see these interests coincide in a recent paper in Biological Conservation. Italian and Yemeni researchers ((The Italian and Yemeni governments, UNDP and IUCN (among others) are financing a Socotra Conservation and Development Programme. Nothing like that when I was there, of course.)) have modeled the distribution of the Socotran endemic Dracaena cinnabari, the Dragonblood Tree, to predict what might happen to it with climate change. It’s not good. This flagship species, whose resin has been the source of a dye and medicine since antiquity, is looking at a halving of its potential area of distribution, due to drier conditions, and only a couple of its current localities will fall within what will remain suitable. Fortunately, they are near a protected area, and the authors recommend that its boundaries be expanded to include them.