- A Genome-Wide Association Study on the Seedless Phenotype in Banana (Musa spp.) Reveals the Potential of a Selected Panel to Detect Candidate Genes in a Vegetatively Propagated Crop. One strong candidate gene, from 6 possible regions. And here’s the light version.
- Yeast culture collections in the twenty-first century: New opportunities and challenges. Pretty much the same as plant genebanks.
- Genetic variation in sorghum as revealed by phenotypic and SSR markers: implications for combining ability and heterosis for grain yield. Possible parents for hybrids identified.
- Actionable knowledge for ecological intensification of agriculture. Look at the landscape, articulate trade-offs and don’t forget the social dynamics.
- Taxonomic and functional diversity in Mediterranean pastures: Insights on the biodiversity–productivity trade-off. Somebody mention trade-offs?
- Are the major imperatives of food security missing in ecosystem services research? Pretty much.
- Reproductive trade-offs in extant hunter-gatherers suggest adaptive mechanism for the Neolithic expansion. Agriculture got you laid, but then killed you.
- High carbon and biodiversity costs from converting Africa’s wet savannahs to cropland. Bad idea all round.
Talking non-biotech strawberries and citrus
If the recent post on the UC Davis Strawberry Wars whetted your appetite, the Talking Biotech podcast can help with a leisurely run-through the history of the crop and efforts to breed it from Kevin Folta and his guest, Dr Jim Hancock, strawberry breeder from Michigan State University. Where things are not as wild as at Davis, apparently. It’s a fascinating story of global interdependence in genetic resources, and the importance of crop wild relatives. And, it turns out the first scientifically bred crop variety was a strawberry. Since I’m at it, the episode on citrus was pretty good too. But Kevin, how about some more explicit recognition of the importance of genetic resources collections (i.e. genebanks) in all this work?
Following Brassica into Genebank Database Hell
Scientists at The Genome Analysis Centre (TGAC) have released the first web repository for Brassica (mustard plants) trait data to tackle reproducibility, user controlled data sharing and analysis worldwide. Scoring the versatile crop’s beneficial traits will assist Brassica breeders in improving their crop yields, increased nutritional benefits and reduce our carbon footprint through biofuel production.
Very worthy, of course. But also, alas, an opportunity missed. How so? Come with me to Genebank Database Hell.
Let’s start with a random germplasm line from the Brassica portal: DEU146_BRA_02028. That’s a weird but somewhat familiar name. People in the know will recognize DEU146 as the code for the German national genebank, IPK. But the organization is given in the portal as CGN, the Dutch national genebank. What’s going on? Stay with me, don’t panic. The portal does provide the following metadata for the material in question:
Provenance: Brassica.xls file downloaded from http://documents.plant.wur.nl/cgn/pgr/brasedb/, March 3rd 2010
Comments: Line name concatenated from resource collection code and genetic resource collection “accession” number; associated data availabel from European Brassica Database of Genetic Resource Collections
Entered by: graham.king@bbsrc.ac.uk
Entry date: 2010-03-03
One’s first instinct of course is to look for the BRA_02028 bit of the name among the DEU146 material in Genesys, but that would be too easy. You have to strip out the assorted underscores, and indeed the leading zero, and that gets you to the right accession, which happens to be from Ethiopia. Breathe.
You could also Google the European Brassica Database of Genetic Resource Collections, as per the metadata, which is hosted by CGN, hence the reference to that organization in the portal. If you search for BRA 2028 you get to the same thing as in Genesys, and eventually to the original record at IPK.
So, to recap: a British guy entered into the Brassica portal some data hosted (as part of a European project) by the Dutch genebank, pertaining to an accession in the German genebank collected in Ethiopia and originally conserved in the old West German national genebank. The actual URL quoted in the metadata returns a 404 error.
Look, I’ve said it before, and no doubt I’ll say it again. It’s great that gene-jockeys like the ones at TGAC build their own databases with all kinds of fancy genotypic and phenotypic data for breeders and other researchers to use. It’s really great, I mean it. It’s what’s going to get the stuff in genebanks used, and we all want that. But please, please, make sure that those breeders and researchers don’t have to go through what I’ve just described to actually get their hands on the seeds. Because I’m pretty sure they won’t. Go through it, I mean. They have better things to do.
Baby oil steps
Is anyone looking for resistant material?
That’s what we asked back in August last year, at the height of the Italian Xylella olive plague panic.
Then in March this year there was news of some 10 cultivars being tested. Now comes this:
An experimental olive plot with almost twenty different olive cultivars (24 replicates for each cultivar) has been set last week in the Xylella-infected area of the province of Lecce (Apulia, southern Italy). The 2-years old plants will be exposed to the natural infective vectors throughout the entire project duration. This plot extends the experimental field established in 2015 within a specific EFSA pilot project and including 10 different olive cultivars, whose evaluations will be followed and continued through the project POnTE.
Which is great and all, but why didn’t they put 50 or 100 cultivars out in the first place?
LATER: Oh, and BTW, did you know you can adopt an olive tree?
Rethinking plant patents, and rethinking again
Åsmund Bjørnstad, a plant breeder and professor at the Norwegian University of Life Sciences at Ås, recently published a stimulating article on plant patents. We asked Daniele Manzella, a policy and legal consultant, to comment. Below are his thoughts. Interested readers may also want to read another recent post on seed IP issues. It is, of course, all very timely.
Åsmund Bjørnstad has recently published a piece in Trends in Biotechnology, under the title “Do Not Privatize the Giant’s Shoulders’: Rethinking Patents in Plant Breeding.” 1 The author starts with a diagnosis that could be seen as controversial: IPRs have an increasing impact on plant breeding. They do not necessarily promote it, though. Arguably, they also delay it.
With plant varieties subject to both plant breeders rights and, with some variations, patents, and with patents spreading into the non-GM breeding sector (e.g. induced mutants, native traits) — just to depict some features of the intricate layering of proprietary claims — the risk of dependency threatens the breeding sector and cannot be mitigated by good breeding practices only. Companies invest considerable resources to monitor protected elements.
Add to that the contentious regulatory area of access to germplasm, composed of requirements stemming from the CBD, the International Treaty and now the Nagoya Protocol, with its corollary of MTAs and market- and non-market-based benefit-sharing schemes, and the blockage to innovation becomes even more robust. The consequences are legal uncertainty and rising costs linked to complex “freedom to operate” analyses, non-optimal technology integration, a narrowing genetic base for breeding due to access restrictions and the resultant avoidance by users.
Åsmund wants to clear the blockage of this anti-commons scenario by combining variety registration and compulsory licensing. Under the label of ‘toll roads, not road blocks’, he introduces the idea of breeders having to declare “patents used” (i.e. patented varieties, traits, or technologies, methods utilized etc.) when registering a new variety for commercialization, to then obtain compulsory licenses from title holders. He extends the proposal to include a declaration of the origin of germplasm, from a country of origin or from the Multilateral System of the Treaty.
In his view, this transparent solution rewards inventors, supports innovation and maintains fairness. A win-win-win!
The proposal is a generous attempt to constructively advance the debate on how to incentivize modern breeding for food security in the current legal landscape. It deserves attention on its merits by scholars and practitioners, who will certainly examine his piece in depth and with the necessary rigor. Åsmund rightly calls for more legal analysis, recognizing some tension with the TRIPS provisions on compulsory licensing. For instance, how to reconcile his proposal with the requirement that compulsory licenses be used predominantly for local markets?
However, I want to pose a more general question in this post, with the hope of triggering discussion. Åsmund’s proposal relies on legislative reforms, presumably of both patent and seed legislation. My question is: are legislative solutions feasible? And, will industry support them? My perception is that industry is in search of solutions that are both timely and global. Among its several strengths, Åsmund’s proposal may show some weakness on both those counts.
Global legal harmonization is slow and rarely keeps pace with technology evolution (in our sector, predictive breeding may soon be a reality). To what extent is it feasible that countries will reach a level of agreement and commitment that translates into harmonized legislative reforms in the various jurisdictions? Is it foreseeable that countries worldwide will act in sync on such heavily debated and complex topics, where multiple interests are intertwined (for instance, I am not addressing in this post developing country perspectives on plant innovation).
Without such agreement and commitment, global scale will not be reached and we will continue adding pieces to the current puzzle of national patent — and seed — laws. Indeed, patent laws are harmonized through minimum standards but, beyond those minimum standards, already display considerable differences from one jurisdiction to another, in terms of rights, limitations and exceptions. Not to mention case law, which is another source of differentiation.
In a nutshell, the current industry initiative for vegetable crops (which you will find described in Åsmund’s article) may well be no more than exploratory, limited in scope and merely voluntary. However, it is cooperative, autonomous and fast — three features that are desirable in any attempt to stimulate a more favourable policy and legal environment for plant breeding.