Cereals databases

Before I disappear for a few days of immersion in the First International Breadfruit Symposium back in Fiji, let me point to two somewhat complementary online resources on cereals genetic resources that I have come across – no doubt Jeremy will say and about time too – in the past couple of days.

The FIGS database brings together passport and evaluation data on bread wheat landraces from a number of the major genebanks and “allows the user to efficiently interrogate the data associated with this collection and provides the capacity to identify custom subsets of accessions with single and multiple trait(s) that may be of importance to breeding programs.” FIGS stands for “Focused Identification of Germplasm Strategy,” and the focus is on identifying material with resistance to abiotic and biotic stresses.

The other database is that of Israel’s Institute of Cereal Crop Improvement, which includes information on accessions of wild cereal relatives collected over the past 30 years. Again, there’s a particular focus on data on disease resistance.

Transgenic salmon

One of the major concerns about transgenic plants and animals has always been that they could escape and that transgenes could then spread into wild populations with mostly unforeseeable consequences. ((Contribution by Michael Kubisch)) For most farmed animal species, cattle, goats or sheep for example, this is not much of a problem because there are no true wild populations with which escapees could hybridize. However, farmed fish, such as salmon or catfish, do have wild relatives, reproduce relatively fast and farmed fish do occasionally escape into the wild, even in large numbers. This has led to a number of estimates and models of what impact such transgenic escapees might have on resident fish populations or on their prey species.

A recent article tells a cautionary tale about the value of such predictions by demonstrating that advantages which transgenic animals have “down on the farm”, such as a faster growth rate if they carry extra copies of the growth hormone (GH) gene, may in fact be less obvious  in the wild. The article describes a study in which GH-transgenic and wild-caught coho salmon were compared in either a conventional hatchery or a simulated natural environment. Under hatchery conditions, in which fish were fed a commercially available diet, the transgenic salmon grew to nearly three times the size of their wild cousins. However, in the natural environment, in which fish were exclusively fed natural food items, transgenics had only a 20% weight advantage. When the salmon were introduced to prey species, in this case trout fry, the impact of transgenic animals on their prey was reflective of their environment and size and the impact of transgenics on prey was much reduced.

While this says relatively little about the actual impact of transgenic escapees on resident fish populations, it does show that accurate predictions may be much harder to come by than previously assumed.

Indian potato chips

Indian potato growers are turning to a new, low-sugar variety of potato because it is better for making chips (crisps if you’re British), for which there is rapidly increasing demand. Would be interesting to monitor the effect on “local” varieties, no?

Sweet smelling durian

Dr Songpol Somsri from Thailand has done a lot of crossing of wild species of durian to come up with one that doesn’t smell like decomposing cats. There should be more recognition for this sort of achievement: it has a greater potential to add to the sum total of human happiness than any number of Nobel Prizes for economics, say.

Hai chihuahua!

A DNA study suggests that small dogs started to appear about 10,000 years ago as a result of a mutation in a single gene (called IGF-1). I wonder if something similar will be found in other domestic animals.