Desperately seeking germplasm

Thanks to Cary for pointing out this interesting request on IdeaConnection, which is basically an online market-place for crowdsourcing solutions to R&D problems. A “client” is willing to pay a finder’s fee of $2,000 for cucumber germplasm resistant to nematodes, Fusarium, CGMMV, downy mildew and cold. Easy money? Hardly. We’re talking about Genebank Database Hell here.

You can search GRIN on evaluation descriptors, but the only one of the target traits for which there are data is downy mildew. Some 175 accessions are listed as having low susceptibility to that disease, but that basically is as far as you can go. You could theoretically download those results with additional data on origin and then maybe focus in on specific countries where you think you might have a better chance of finding cold-tolerant material. Like Canada, maybe. But I was not able to get the download to work. There are probably ways around it, but the bottom line is that at most we’d be able to satisfy one and maybe a half of the conditions. CGN also allows a search on plant traits, but only characterization descriptors, and if any of its 937 cucumber accessions satisfy the search criteria, we won’t be able to find out online. AVRDC does allow a search on pest and disease resistance, but I don’t know enough about the subject to know whether the two cucumber mosaic viruses listed are the same as CGMMV, and in any case there are no accessions resistant to either.

That two grand clearly won’t be easy to claim just by trawling public genebank databases, which is kind of a damning indictment of the state of genetic resources documentation, and probably the reason why the “client” went the IdeaConnection route in the first place. It’ll have to be an inside job, I guess, a breeder or genebank curator who knows they have the requisite germplasm sitting on their shelf, say.

But wait, not all is lost, maybe watermelon might be easier?

John Innes’ peas on the BBC

The John Innes Centre announces on Facebook that, on the latest episode of the BBC2 programme Great British Food Revival, the Centre’s genebank curator, Mike Ambrose…

…talks to celebrity chef Ainsley Harriot about peas, and introduces him to the JIC collection of 3,500 types of pea. Available in the UK until 6:59PM Tue, 22 Nov 2011 (pea segment starts after 29 mins).

Alas, not available here in Italy. Can someone in the UK watch the pea segment and tell us about it, please? The JIC pea collection is one of the largest in the world.

LATER: Or, you can watch this: 1

http://www.youtube.com/watch?v=C6PSNMFV20k

Goat weight competitions in Pakistan

I can’t resist sharing this message which Prof. Dr. Muhammad Sajjad Khan sent to DAD-Net yesterday.

News of the hour is that new weight record of a goat is now 291 kg. This was accomplished in the weight competitions just held during the last one hour here at Faisalabad (Pakistan). The Buck belonged to Beetal breed and strain was Faisalabadi. Some of you might know that last year’s record was 280 kg and some people did not believe that it could be broken. See the potential. The 2nd and 3rd position holders were not far away (289.5 and 289 kg). Weight competitions for goats are held every year here at Faisalabad before the Eid festival. For younger bucks (less than 2 teeth, completions are expected to be completed on Sunday, the 30th Oct. Will share the photos and details. The beauty, weight and milk competitions at individual and flock level are expected to be completed by Monday. I will post the photos soon. University of Agriculture Faisalabad (Pakistan) is organizing these competitions and among others, GEF-UNEP-ILRI Asia project is one of the co-sponsors.

Can’t wait for those photos…

Digging around for evidence of horse domestication

I could have sworn I had already blogged about the fascinating recent archaeological finds in Saudi Arabia which seem to have pushed the evidence of horse domestication back to 9000 years ago and to a somewhat different area. But if I did, I can’t find the post. Uzbekistan, yes. A genetic nibble from China, yes.

But nothing about the Al-Magar finds. No matter, though, because now horsetalk.co.nz has a great roundup not only of the Saudi findings, but also of those from different sites in Kazakhstan, complete with photos. Findings which may well lead to a slight change in the geographical reference in the following pithy summary of the genetic evidence that we also blogged about recently.

Horses were domesticated in a broad area across the Eurasian steppe, and in this species the husbandry style has left considerable signatures. It is presumed that mares were domesticated numerous times, but that only a few stallions contributed to the genetic make-up of the domestic horse.