Livestock trifecta

Thanks to the hyperactive DAD-Net, three bits of news of interest for livestock diversity conservation:

  • A report on Rare Breed International’s 8th Global Conference.
  • New articles in the journal “Pastoralism” are open access online. But for how long?
  • NordGen is seeking a leader of NordGen-Farm Animals. It says here there is more info online but I can’t find it. No doubt it’ll be up soon.

LATER: Oh, and here are the pictures from the Pakistani National Goat Show, including some of the winning entries.

A tale of three cucumbers

You may remember my post of a few days back about the request on IdeaConnection for cucumber germplasm resistant to nematodes, Fusarium, CGMMV, downy mildew and cold, for a finder’s fee of $2,000. I did a few genebank database searches and didn’t get very far at the time, but a comment from the curator of the cucumber collection at CGN sent me back to their website because I had missed this crucial bit:

Searches can be made based on passport data and characterization / evaluation data or both. Only a selection of traits is on-line searchable, however all data are downloadable.

It turns out that the downloadable evaluation data for cucumber includes 3 experiments on downy mildew and one on Cucumber Green Mottle Mosaic Virus (CGMMV). So I got the Excel files and cross-searched them for material resistant to both diseases. The result is three accessions: CGN19618 (Taiwan), CGN21584 (India) and CGN22272 (Japan). The first two even have georeferences. The Japanese accession doesn’t, alas, but that would be my choice of the three for cold-hardiness. It’s a pickle obtained from the Know You Seed 1 seed company. That’s three out of the five traits. I think that’s worth at least a thousand bucks, don’t you?

Featured: Cucumber germplasm

Willem van Dooijeweert sets Luigi right on cucumber evaluation and documentation:

My name is Willem van Dooijeweert and I am the curator of the CGN cucumber collection. I read the request for germplasm of cucumber having certain traits on IdeaConnection. I can imagine that somebody wants to pay $2,000 for a resistance source to CGMMV. As far as I know this is still not found or not public yet. Concerning searchable data on the CGN website I want you to know that we make available all data we have. So if you cannot find evaluation data of cucumber, we simply do not have them. This has nothing to do with the state of our documentation.

A RING to rule them all

The CIARD Routemap to Information Nodes and Gateways (RING) is a project implemented within the Coherence in Information for Agricultural Research for Development (CIARD) initiative and is led by the Global Forum on Agricultural Research (GFAR).

The RING is a global registry of web-based services that give access to any kind of information pertaining to agricultural research for development (ARD). It is the principal tool created through the CIARD initiative to allow information providers to register their services in various categories and so facilitate the discovery of sources of agriculture-related information across the world. The RING aims to provide an infrastructure to improve the accessibility of the outputs of agricultural research and of information relevant to ARD management.

But what, no germplasm databases? 2 No Genesys? No WIEWS? Get registering, genebanks (and others)!

Desperately seeking germplasm

Thanks to Cary for pointing out this interesting request on IdeaConnection, which is basically an online market-place for crowdsourcing solutions to R&D problems. A “client” is willing to pay a finder’s fee of $2,000 for cucumber germplasm resistant to nematodes, Fusarium, CGMMV, downy mildew and cold. Easy money? Hardly. We’re talking about Genebank Database Hell here.

You can search GRIN on evaluation descriptors, but the only one of the target traits for which there are data is downy mildew. Some 175 accessions are listed as having low susceptibility to that disease, but that basically is as far as you can go. You could theoretically download those results with additional data on origin and then maybe focus in on specific countries where you think you might have a better chance of finding cold-tolerant material. Like Canada, maybe. But I was not able to get the download to work. There are probably ways around it, but the bottom line is that at most we’d be able to satisfy one and maybe a half of the conditions. CGN also allows a search on plant traits, but only characterization descriptors, and if any of its 937 cucumber accessions satisfy the search criteria, we won’t be able to find out online. AVRDC does allow a search on pest and disease resistance, but I don’t know enough about the subject to know whether the two cucumber mosaic viruses listed are the same as CGMMV, and in any case there are no accessions resistant to either.

That two grand clearly won’t be easy to claim just by trawling public genebank databases, which is kind of a damning indictment of the state of genetic resources documentation, and probably the reason why the “client” went the IdeaConnection route in the first place. It’ll have to be an inside job, I guess, a breeder or genebank curator who knows they have the requisite germplasm sitting on their shelf, say.

But wait, not all is lost, maybe watermelon might be easier?