A natural experiment with Peruvian potatoes

Potatoes are generally propagated vegetatively, by planting tubers. In English, these tubers used for planting are, unfortunately, referred to as seed, which they obviously aren’t, at least not in the botanical sense. Potato breeders use sexual reproduction and the resulting real seeds (extracted from the tomato-like potato fruits) to generate new varieties. The fabled potato diversity of the Andes probably originated from seeds arising from spontaneous crosses among landraces and with their wild relatives, and alert farmers that kept some of the offspring occurring in their fields. But when and where were Andean potato varieties formed? And is this type of evolution still going on?

potatoseed

Marc Ghislain and colleagues 1 took advantage of a natural experiment in Peru to investigate whether new varieties have arisen from crosses between ‘Yungay’, and other varieties. Yungay 2 is one of the varieties of the famous Peruvian potato researcher Carlos Ochoa, produced by crossing native and exotic potatoes (from Europe, the USA, and Chiloe). Because it is genetically rather distinct from native Peruvian varieties (here is its pedigree), Ghislain and colleagues were able to use genetic markers (SSRs, in fact) to determine if a given potato variety in a farmer’s field might be an offspring of Yungay.

They looked at the DNA of 1771 leaf samples from more than 400 potato varieties growing in areas where Yungay is also grown. None of the potatoes sampled could plausibly be identified as a descendant of Yungay.

The authors’ motive was to find out whether transgenes from genetically modified potatoes might ‘pollute’ native diversity. I am more interested in the question of whether farmers are still finding, keeping and spreading new varieties from spontaneous seedlings. That would seem likely, but there appears to be no good evidence that they do so. We know that hybridization among potato cultivars, and with wild species, occurs under field conditions, but what happens to the offspring? Ghislain and his colleagues suggest that hybrids may not be adapted, and thus die off, citing research carried out in the rather unforgiving climate of Puno, and that farmers discard hybrids because they prize the quality of native varieties. But I am not convinced by that argument. Clearly, many hybrids will not make the cut, as in any breeding program, but some novelty must surely be of interest to local farmers, as it obviously has been in the past.

peru-potato-field

Is keeping new potato varieties a cultural practice that has been lost? And are most current native potato varieties therefore old, perhaps very old? Or is the process still going on, perhaps even at a similar rate as before, but the chance of detecting it is small? I wonder if there is some sort of clock that can be used to measure how old a variety is. After all, a variety is really an individual clonally propagated plant. And some potato varieties are thus of course much larger organisms than those molds that occasionally hit the headlines; each year there are about 10,000 ha of Russet Burbank in the USA alone.

Unless there is simply something wrong with Yungay’s offspring (which would make it a bad variety to use for this type of research), my guess is that there are hybrids with Yungay out there, but not many, and that they are just very hard to find. Only very few novel varieties may be good enough to spread beyond a farm to a much larger area, such that we are likely to detect them. But a transgene hybrid could have better odds than most.

Super bananas in the dock

The Gates Foundation has sunk $15 million into developing GMO ‘super bananas’ with high levels of pre-Vitamin A, writes Adam Breasley. But the project is using ‘stolen’ genes from a Micronesian banana cultivar. And what exactly is the point, when delicious, popular, nutritious ‘red bananas’ rich in caroteinoids are already grown around the tropics?

That provocative lede to an article in The Ecologist provoked a number of responses when I posted it on Facebook 3. As not everyone can post comments there, and nobody at all can post comments at The Ecologist, I’ve decided to move the whole thing here.

A couple of comments were actually questions. Anastasia Bodnar asked: Are the existing red banana cultivars suitable for growing where this new variety is intended to be grown? And Sarah Hearne added: And do the red bananas have the same farmer/consumer acceptance in East African and beyond as existing varieties? Good questions all. And Alexandra Zum Felde addressed them, and more, in her comment:

Red bananas — at least ones like those in the photo, not Fe’i bananas — can and are grown where Cavendish are grown (so basically all over the tropics), though they — like many traditional cultivars — are not as productive as Cavendish bananas. But Cavendish are not the issues here — in Uganda the staple banana is Matooke (East African Highland Banana), of which over 180 cultivars exists … and all of which are pretty beta-carotene poor … but local leafy vegetables are full of (pro)vitamins! It would be easier and more cost-effective to re-vamp the image and attractiveness of traditional foods, than to introduce one single GMO variety.

So, are red bananas, whether traditional cultivars or the ones genetically engineered in an Australian lab, the wrong answer to the right question? Discuss.

Nibbles: R&D, Cheese double, Cali candied yams, Sustainable joe, Soy & deforestation, Cereals in Sudan, Big Ag, History of breeding

The ins and outs of safety duplicating germplasm collections

On that issue of collaboration between national programmes and international genebanks, which we alluded to yesterday when we were talking about ICARDA and Morocco, it might be worth highlighting another example. We Nibbled this before, but it can stand a bit more exposure.

The new genebank of Embrapa, which opened in April this year at Cenargen, one of the 46 units of the Brazilian Agricultural Research Corporation in Brasilia, received today (06/11) the first deposit from an international collection of plant genetic resources. This is a backup of [part of] the potato collection from CIP (International Potato Center) in Peru, which has four thousand samples of wild species and cultivated varieties, and is the most diverse and extensive in the world, as the country [together with neighbours] is the genetic cradle of this Andean crop. This first instalment consisted of 180 [in vitro] samples from nine varieties. The next shipment will be sent in February 2015 and by the middle of next year, probably the whole collection will have arrived in Brazil.

That’s a translation from an Embrapa press release, 4 by me via Google Translate. Vegetatively propagated (or clonal) crops such as potato and cassava, which are conserved in the field and in tissue culture, require a bit more effort for safety duplication compared to seed crops. See, for example, what’s going on with bananas. It’s great to see CIP and Embrapa coming together in this way. Maybe Embrapa could also eventually safety duplicate in reciprocal fashion its own collections in the international centres. Its cassava clonal collection is very important, for example, and not safety duplicated. Look at Table 3 on page 21 of the global cassava conservation strategy (pdf), and then read the discussion on page 41:

Column 14 [of Table 3] indicates the importance of introducing national program accessions that are not yet represented in the international centers, for safety duplication (see also later sections). These low, medium and high priorities are based on number of in situ or ex situ materials not yet at CIAT or IITA, and the relative importance of that country’s cassava genetic diversity. Critical countries for further representation in the international centers are: Brazil, Peru, Republic of Congo, Côte d’Ivoire, D.R. Congo, Malawi, Mozambique, Rwanda, Uganda and Tanzania, along with several other countries of medium urgency.

Some seeds from Embrapa are already in Svalbard. But there’s no Svalbard for clonal collections, alas.

Nibbles: Hunger Games, Nutritious markets, Plant secrets, Nutrition soundbites, Buckwheat panic, Olive oil panic, Cannabis breeding, Wild turkey genetics, Quinoa wars, Domestication infographics, Howard-Yana Shapiro