- The Corylus mandshurica genome provides insights into the evolution of Betulaceae genomes and hazelnut breeding. Yeah, but can it make Nutella better?
- Widely assumed phenotypic associations in Cannabis sativa lack a shared genetic basis. More work needed. Much more work.
- Dissecting industrial fermentations of fine flavour cocoa through metagenomic analysis. There’s a core of microorganisms in common even in very distant farms. Though I suspect the fun will be in the others.
- Widespread lateral gene transfer among grasses. Especially in rhizomatous species. That should relieve the anxiety about genetic modification, right? Right.
- An agroecological vision of perennial agriculture. Wait, what about those rhizomatous perennial grasses, though?
- Comparison of benchtop and handheld near‐infrared spectroscopy devices to determine forage nutritive value. The handheld devices are just fine. How long before Alice asks Chris for some for the ILRI genebank? To test on rhizomatous grasses, of course.
- Historical Indigenous Land-Use Explains Plant Functional Trait Diversity. Forest gardens in the Pacific NW still have more diversity 150 years after their indigenous managers were forced off them.
- The minimum land area requiring conservation attention to safeguard biodiversity. 44% of terrestrial area, home to 1.8 billion people. Presumably including a lot of indigenous managers.
- People have shaped most of terrestrial nature for at least 12,000 years. 75% of terrestrial area, in fact.
- Protection of honeybees and other pollinators: one global study. Focus on habitat loss and pesticides. And more monitoring.
- A sexual division of labour at the start of agriculture? A multi-proxy comparison through grave good stone tool technological and use-wear analysis. Guess which gender was buried with tools associated with interpersonal violence.
- Origins of house mice in ecological niches created by settled hunter-gatherers in the Levant 15,000 y ago. Well, hence the name, right?
- Commentary: Underestimating the Challenges of Avoiding a Ghastly Future. Don’t warn. Resist.
A taste of coffee to come
Seems like it’s probably worth recapping the whole new-species-will-save-your-morning-coffee-from-climate-change story that’s been going around.
It all started last year with a paper describing the rediscovery in the wilds of Sierra Leone of a species of coffee that used to be very well liked but then fell out of commercial favour due to low yields. It’s called Coffea stenophylla ((More on this database of wild coffee here. There is only one entry for C. stenophylla in Genesys, from CATIE, but there are some doubts about it.)) and of course Jeremy did a podcast about it, interviewing one of the authors of said paper, the very engaging Prof. Jeremy Haggar.
Fast forward a year and we now have a follow-up paper assessing the taste of coffee made from beans of C. stenophylla from that (very tiny, alas) wild population in Sierra Leone and also from a (more substantial) CIRAD research stand in La Reunion. And guess what? It’s really good. So of course Jeremy went back to Prof. Haggar for another nice chat.
C. stenophylla grows in hot and humid lowlands, so it’s a little more ready for climate change than your average arabica. ((There’s also a video now.)) Still, the yield issue is presumably still there, and no doubt other problems will arise, as they always do. But I’m keeping my fingers crossed, because I really want to taste the stuff — and boost Sierra Leonean business along the way.
Oh and of course we’ll have to revise the global coffee diversity conservation strategy now…
Brainfood: Allium collecting, IPK barley double, Capsicum crossability, Genetic erosion, Chickpea breeding, Maize phenotyping, Maize landraces, Pre-adaptation, Synthetic peanuts, Genomic offset, Cotton domestication, Public breeding, Wholeness, Smallness trifecta
- Collecting and regenerating populations of the Allium ampeloprasum complex from Greece. There’s some good news, and some bad news.
- Genomic prediction models trained with historical records enable populating the German ex situ genebank bio-digital resource center of barley (Hordeum sp.) with information on resistances to soilborne barley mosaic viruses. Good news if you want to get usable data on genebank accession from old experiments.
- Using Genome-Wide Predictions to Assess the Phenotypic Variation of a Barley (Hordeum sp.) Gene Bank Collection for Important Agronomic Traits and Passport Information. Good news if you thought the above was good news.
- Reproductive compatibility in Capsicum is not necessarily reflected in genetic or phenotypic similarity between species complexes. Bad news for the genepool concept.
- Trends in Varietal Diversity of Main Staple Crops in Asia and Africa and Implications for Sustainable Food Systems. Bad news, especially for Asia, if you like to see diversity on farm.
- Broadening the genetic base of cultivated chickpea following introgression of wild Cicer species-progress, constraints and prospects. Good news if you like to see diversity in chickpea breeding.
- DeepCob: Precise and high-throughput analysis of maize cob geometry using deep learning with an application in genebank phenomics. Great news if you’ve got a whole bunch of maize cobs to measure.
- Demonstration of local adaptation of maize landraces by reciprocal transplantation. Good news if you think landraces are locally adapted.
- Exaptation Traits for Megafaunal Mutualisms as a Factor in Plant Domestication. Good news if you want to learn a new word. Fascinating stuff, all kidding apart.
- Morphological and reproductive characterization of nascent allotetraploids cross-compatible with cultivated peanut (Arachis hypogaea L.). Good news if you like the idea of re-running domestication and there’s no suitable megafauna available.
- Parallel and Intertwining Threads of Domestication in Allopolyploid Cotton. Good news if you’re interested in the domestication, spread, and introgression of the 2 New World cottons.
- Can public universities play a role in fostering seed sovereignty? The good news is the answer is yes.
- Ecosystem integrity is neither real nor valuable. The good news is this may be a straw man. Interesting argument, though.
- Prospects and limitations of genomic offset in conservation management. Good news if you abandon the concept of ecosystem integrity.
- Higher yields and more biodiversity on smaller farms. Good news if you still think small is beautiful.
- Do small food businesses enable small farms to connect to regional food systems? Evidence from 9 European regions. More good news for small farms.
- Global Legal Constraints: How the International System Fails Small-Scale Farmers and Agricultural Biodiversity, Harming Human and Planetary Health, and What to Do About It. Bad news for the agri-food-industrial complex, come the revolution.
Nibbles: Superfoods, Value chains book, North American ag origins, Origins of beer, Community seed banks, Seed diversity
- What’s the next global “superfood”? Most likely it’s the next local “superfood”. Jeremy interviews economist Trent Blare.
- And here’s a book that expands on that podcast.
- Speaking of podcasts, here’s one that dissects the Eastern Agricultural Complex, at least in the last 20 mins. The rest is informative and fun too, though. Spoiler alert: it’s the food storage. Any superfoods in there though?
- Always fun to read about the history of beer.
- Project on community genebanks launched by government genebank.
- Seeds of all sizes and shapes in genebanks.
Brainfood: DSI, SMTA, Geno-Phenotyping, Adoption ceiling, Vegetable seeds, Neutral diversity, Trait variation, Feed interventions, Polyploidy, Varietal selection, Sugarcane genomes, African supply chains, Farmers Rights, Agroforestry
- Bringing access and benefit sharing into the digital age. One thing needed: a Multi‐stakeholder Committee on the Governance of Digital Sequence Information. Well that was easy.
- A contract‐law analyses of the SMTA of the Plant Treaty: Can it work as a binding contract? Three things: the SMTA needs to be valid, binding and enforceable. Which it isn’t now, apparently.
- Recent Large-Scale Genotyping and Phenotyping of Plant Genetic Resources of Vegetatively Propagated Crops. Five things: standardized SSR loci, GBS-derived SNPs, SNP arrays, high-throughput phenotyping system, GWAS.
- “Breaking through the 40% adoption ceiling: Mind the seed system gaps.” A perspective on seed systems research for development in One CGIAR. Four things: capture the demand characteristics of farmers, identify effective seed delivery pathways, ensure seed health and stopping the spread of disease, effective policies and regulation. I guess this is where the Toolkit comes in.
- Africa’s evolving vegetable seed sector: status, policy options and lessons from Asia. Four things: technical capacity, regulations, extension, marketing. Well, yeah.
- The inflated significance of neutral genetic diversity in conservation genetics. Three things: functional genetic diversity, demographic history, and ecological relationships.
- Intraspecific trait variation in plants: a renewed focus on its role in ecological processes. Three things: report individual replicates and population means, investigate mechanisms that affect ITVs, studies that span sub-disciplines (see paper above).
- A scoping review of feed interventions and livelihoods of small-scale livestock keepers. Three things: consider absorptive capacity of livestock keepers and extensionists, focus on semi-commercial sector, consider resource requirements of feed options. It’s all in the podcast. Remarkable similarity with the vegetables thing above, eh?
- Induced Polyploidy: A Tool for Forage Species Improvement. Two things. Thanks, colchicine.
- Varietal selection in marginal agroecological niches and cultural landscapes: the case of rice in the Togo Hills. Three things: participation, low-input conditions, landraces.
- Three founding ancestral genomes involved in the origin of sugarcane. A, B and C.
- “Essential non‐essentials”: COVID‐19 policy missteps in Nigeria rooted in persistent myths about African food supply chains. Five things: imports are not central to food security, rural families buy a lot of food, small farmers access markets after all, small & medium enterprises are hidden but not missing, domestic distribution is important.
- What Should Farmers’ Rights Look Like? The Possible Substance of a Right. 64 things.
- The one hundred tree species prioritized for planting in the tropics and subtropics as indicated by database mining. Bingo!