Cocoa from tree to cup

News from both ends of the cacao value chain today. At the upstream end, new molecular marker work on over a thousand genebank accessions reveals that the species is divided into no less than 10 genetic clusters, rather than the conventionally recognized two. These show a clear geographic pattern: they are strung out along an east-west axis in the Amazon, probably reflecting, according to the authors, the location of ancient ridges (“palaeoarches”), which were barriers to dispersal not only for Theobroma but also for various fish groups. Meanwhile, at the downstream end, there’s an account of a visit to a “chocoholic mecca” in Santa Fe.

LATER. And, for the trifecta, news from somewhere around the middle of the value chain.

LATER STILL. What comes after trifecta?

Nibbles: Radishes, Fungi, Genomics, Bagel, Eels, Barack Hussein, Pomegranate

Purple tomatoes for longer life — if you’re a mouse

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I was going to do an in-depth analysis of a paper in tonight’s Nature Biotechnology, but it’s been a busy weekend and there are two press releases out there that do enough of a job on it for my purposes. From one:

Scientists have expressed genes from snapdragon in tomatoes to grow purple tomatoes high in health-protecting anthocyanins. … The scientists tested whether these elevated levels actually had an effect on health. In a pilot test, the lifespan of cancer-susceptible mice was significantly extended when their diet was supplemented with the purple tomatoes compared to supplementation with normal red tomatoes.

Mice given 10% of their diet in the form of powdered, freeze-dried purple tomato lived an average of 182 days, compared to 142 days for mice fed the same amount of freeze-dried red tomato or no supplement, which did not differ from one another. That’s great. Proof of concept, if you like.

From the other:

“The study” says Cathie Martin, FLORA project coordinator “confirms the latest research trends arguing that we can obtain significant beneficial effects by simple changes in our daily diet. We are not talking of pills or supplements but only food. It is worthy of notice that recommendations by worldwide governments risk to be unaccepted. The 5-a-day program promoted by the American National Cancer Institute 20 years ago does not seem to be very incisive and not just because of the lack of time. Financial crisis is giving an hand to the failure of good intentions mainly due to the expensive costs of fruits and vegetables. Research has to do something, has to find new ways to face the challenge. A solution may rely on concentrating in few but selected products the largest part of nutrients we should intake during the whole day”. ((I think this may have been babelfished a couple of times, but that’s not my responsibility.))

Researchers are clearly working hard to put anthocyanin genes into tomatoes, hoping, I suppose, that eventually people will eat those, or freeze-dried anthocyanin-rich genetically-engineered tomato powder, to ward off cancer. I wonder though, why they didn’t start with a naturally purple tomato and attempt to up-regulate the purple pigment genes. Too difficult? There are many such varieties, and I happen to be sensitized to them right now because in connection with something else I came across the Organic Seed Project, which lists “Improvement of Prudens Purple Tomato” as one of its Participatory Plant Breeding projects. Alas, that’s all it does. List it. Anyone know more?

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The top photograph, from the research scientists, shows their very purple engineered tomato. The lower one, which has a very bluish cast, suggesting an excess of Photoshopping zeal, shows Prudens Purple in the centre and Black from Tula, a Russian variety, on the right. I’m not aware of any thorough measurements of anthocyanins in tomato varieties, though there is a wild relative with a gene that produces anthocyanin fruit. What is more, it has been conventionally-bred into domesticated tomatoes. We blogged it almost two years ago. ((Although the link that points to is dead and gone.)) I wonder why we have heard no more about it.

My point is not that there’s anything wrong with genetically engineered purple tomatoes. It is that lots of people may think there is. Indeed, and I know I’m going out on a limb here, such a belief may even be more common among those who are most likely to eat food-based dietary supplements to promote good health. So if researchers really want people to eat their tomatoes, why engineer them?

What is a landrace anyway?

When plant genetic resources people are tired and emotional, and sometimes when they’re not, talk can turn to landraces. What are they? Can they be identified unequivocally? Can they be associated with a geographical location? Are names anything other than a convenient fiction? Whole chapters, if not entire books, have been written on the subject. ((I should know; I wrote one, five years ago, which I’d link to if it had been published.)) There are definitions aplenty, of course, but that’s not the same as an answer.

Wrapped up in the definitions, and the answers, are notions of genetic variability within the landrace population and an element of selection being needed to maintain the landrace’s properties and maybe guide it in new directions. But that, of course, is crucially affected by the breeding biology of the species concerned. Bluntly, species that are reproduced clonally, like figs, say, or potatoes, are unlikely to have any variability within the landrace while those that are obligate outbreeders, such as maize, are going to be much more variable within the population and likely to change over time too. And then there are inbreeders — beans like Phaseolus vulgaris — in which the landrace is probably a mixture of different genetically pretty uniform types, each of which may well breed true, although the proportions of each may vary from season to season and from place to place.

All of which is a long and roundabout introduction to three recent papers in Theoretical and Applied Genetics that tackle the problem of landrace identity, all of them using molecular markers.

Oat (Avena sativa) is normally self-pollinating, but occasional crossing does occur. So we would not expect much variation within a population. Good thing that, because Hermann Buerstmayr and his colleagues sampled DNA from only three individuals in each of 114 oat varieties gathered from around the world. ((Ref to come DOI 10.1007/s00122-008-0843-y))