- The Sahara Forest Project: what could possibly go wrong?
- Maybe they should try breadfruit. Or avocados. Or ask this guy for advice.
- Not for all the sustainable tea in China!
- Or all the high-Fe pearl millet in India.
- Or all the wild chickens in South Asia.
- Cassava gets the genomic selection treatment. Maybe wheat too?
- Did someone mention beer?
Bread wheat genome rises
It’s a good day for cereal genomes. Nature offers both bread wheat and barley, and they’re both open access. That’s great; you can read them yourself and draw your own conclusions. Nature’s commentary on the matter, however, will set you back $18, which seems fair enough. The crucial points are:
- The wheat genome is huge — three sets of chromosomes derived from three different ancestors — and complex. So this isn’t actually a complete sequence.
- It is, however, a great scaffold on which to build a more detailed sequence, using additional techniques.
- The sequence has already revealed that members of some gene families have been lost since the ancestral hybridisation, while others, notably those involved in specific areas of plant metabolism and growth, have expanded.
- The best wheat yields can exceed 12 tonnes per hectare; the global average is more like 2 t/ha, and that is likely to be undermined by climate change. Will the genome help breeding efforts? Some people clearly hope so.
Barley was a relatively simple challenge, just one set of chromosomes, and smallish ones at that. And barley is already much more tolerant of physical stresses than many other cereals. So rather than looking to the genome for help in breeding better barley (though that is surely on the cards) researchers ask how barley’s genes help it to be so tolerant, and then use the answers to improve other cereals.
Brainfood: Pig genome, Turkey genome, Big genomes, Maize genome, Potato improvement, Mango diversity, Coconut germination
- Analyses of pig genomes provide insight into porcine demography and evolution. More wild diversity in Asia, suggesting origin there, followed by migration to Europe. Separate domestication in SE Asia and Europe, followed by geneflow.
- Whole genome SNP discovery and analysis of genetic diversity in Turkey (Meleagris gallopavo). Lot less diverse than chicken. Or pig. Commercial breed even less diverse.
- Why size really matters when sequencing plant genomes. We must not shy away from the big genomes.
- QTL mapping in three tropical maize populations reveals a set of constitutive and adaptive genomic regions for drought tolerance. Eureka!
- Crops that feed the world 8: Potato: are the trends of increased global production sustainable? Maybe. But can you guess what will be needed? Nice review of genebank holdings and improvement strategies and aims.
- Physico-chemical Characterization of Unexploited Mango Diversity in Sub-mountane Zone of Northern India. 28 varieties in the Punjab, with all kinds of different uses.
- Germination Rate is the Significant Characteristic Determining Coconut Palm Diversity. Natural and artificial selection associated with different rates of germination (as well as other phenotypic traits of course).
Nibbles: Chicken diversity, Pig genome, Genome size
- Breeders like chicken diversity. Blogger refrains from cock and chick jokes.
- Breeders will like the pig genome. Blogger refrains from sausage jokes.
- Size matters. In genomes, that is. Blogger quits while he’s ahead.
Brainfood: Sierra Leone rice, Bean breeding, Cacao geographic diversity, Red fleshed apples, Species richness & productivity, African maize diversity, Human expansion, Barley gaps, Wild coffee and CC, Acacia and CC, Genetic erosion
- Analysis of genetic diversity in farmers’ rice varieties in Sierra Leone using morphological and AFLP markers. Still a lot of diversity in traditional rice after the war, both among and within landraces, mostly among, organized regionally, and recognized by local names.
- Simultaneous selection for resistance to five bacterial, fungal, and viral diseases in three Andean × Middle American inter-gene pool common bean populations. Thanks goodness for multiple independent domestication events. And genebanks.
- Present Spatial Diversity Patterns of Theobroma cacao L. in the Neotropics Reflect Genetic Differentiation in Pleistocene Refugia Followed by Human-Influenced Dispersal. So need to collect in areas at the margins or just outside the refugia if you want high diversity. But of course that may already be ex situ. But wait, didn’t you just do the analysis based on the provenance of ex situ holdings?
- An ancient duplication of apple MYB transcription factors is responsible for novel red fruit-flesh phenotypes. The whole genome got duplicated during evolution of the apple and the red flesh phenotype is controlled by loci in both copies, but in different ways.
- What is the form of the productivity–animal-species-richness relationship? A critical review and meta-analysis. Positive.
- Spatial Structure and Climatic Adaptation in African Maize Revealed by Surveying SNP Diversity in Relation to Global Breeding and Landrace Panels. Distinct Sahelian, Western and Eastern clusters. Some SNPs associated with high temperatures.
- MtDNA analysis of global populations support that major population expansions began before Neolithic Time. Humans needed good weather to thrive, not agriculture.
- Genetic gap analysis of wild Hordeum taxa. Argentina?
- The Impact of Climate Change on Indigenous Arabica Coffee (Coffea arabica): Predicting Future Trends and Identifying Priorities. Generally very bad to disastrous, but some “core localities” will be ok, and therefore could be used for in situ conservation. Interestingly, genebank accession locality data not used.
- The genus Acacia (Fabaceae) in East Africa: distribution, diversity and the protected area network. No such luck for Acacia, I’m afraid.
- Monocropping Cultures into Ruin: The Loss of Food Varieties and Cultural Diversity. Are you sure you want to know what a sociologist and a political scientist have to say on the matter?