- Analyses of pig genomes provide insight into porcine demography and evolution. More wild diversity in Asia, suggesting origin there, followed by migration to Europe. Separate domestication in SE Asia and Europe, followed by geneflow.
- Whole genome SNP discovery and analysis of genetic diversity in Turkey (Meleagris gallopavo). Lot less diverse than chicken. Or pig. Commercial breed even less diverse.
- Why size really matters when sequencing plant genomes. We must not shy away from the big genomes.
- QTL mapping in three tropical maize populations reveals a set of constitutive and adaptive genomic regions for drought tolerance. Eureka!
- Crops that feed the world 8: Potato: are the trends of increased global production sustainable? Maybe. But can you guess what will be needed? Nice review of genebank holdings and improvement strategies and aims.
- Physico-chemical Characterization of Unexploited Mango Diversity in Sub-mountane Zone of Northern India. 28 varieties in the Punjab, with all kinds of different uses.
- Germination Rate is the Significant Characteristic Determining Coconut Palm Diversity. Natural and artificial selection associated with different rates of germination (as well as other phenotypic traits of course).
Nibbles: Chicken diversity, Pig genome, Genome size
- Breeders like chicken diversity. Blogger refrains from cock and chick jokes.
- Breeders will like the pig genome. Blogger refrains from sausage jokes.
- Size matters. In genomes, that is. Blogger quits while he’s ahead.
Brainfood: Sierra Leone rice, Bean breeding, Cacao geographic diversity, Red fleshed apples, Species richness & productivity, African maize diversity, Human expansion, Barley gaps, Wild coffee and CC, Acacia and CC, Genetic erosion
- Analysis of genetic diversity in farmers’ rice varieties in Sierra Leone using morphological and AFLP markers. Still a lot of diversity in traditional rice after the war, both among and within landraces, mostly among, organized regionally, and recognized by local names.
- Simultaneous selection for resistance to five bacterial, fungal, and viral diseases in three Andean × Middle American inter-gene pool common bean populations. Thanks goodness for multiple independent domestication events. And genebanks.
- Present Spatial Diversity Patterns of Theobroma cacao L. in the Neotropics Reflect Genetic Differentiation in Pleistocene Refugia Followed by Human-Influenced Dispersal. So need to collect in areas at the margins or just outside the refugia if you want high diversity. But of course that may already be ex situ. But wait, didn’t you just do the analysis based on the provenance of ex situ holdings?
- An ancient duplication of apple MYB transcription factors is responsible for novel red fruit-flesh phenotypes. The whole genome got duplicated during evolution of the apple and the red flesh phenotype is controlled by loci in both copies, but in different ways.
- What is the form of the productivity–animal-species-richness relationship? A critical review and meta-analysis. Positive.
- Spatial Structure and Climatic Adaptation in African Maize Revealed by Surveying SNP Diversity in Relation to Global Breeding and Landrace Panels. Distinct Sahelian, Western and Eastern clusters. Some SNPs associated with high temperatures.
- MtDNA analysis of global populations support that major population expansions began before Neolithic Time. Humans needed good weather to thrive, not agriculture.
- Genetic gap analysis of wild Hordeum taxa. Argentina?
- The Impact of Climate Change on Indigenous Arabica Coffee (Coffea arabica): Predicting Future Trends and Identifying Priorities. Generally very bad to disastrous, but some “core localities” will be ok, and therefore could be used for in situ conservation. Interestingly, genebank accession locality data not used.
- The genus Acacia (Fabaceae) in East Africa: distribution, diversity and the protected area network. No such luck for Acacia, I’m afraid.
- Monocropping Cultures into Ruin: The Loss of Food Varieties and Cultural Diversity. Are you sure you want to know what a sociologist and a political scientist have to say on the matter?
The relationships among food plants
…I wasn’t able to find out if Wasabia and Armoracia are much related, though I doubt it.
No doubt I gave up too easily, something else I probably wouldn’t do now, like alliterate post titles and neglect to search for ex situ holdings. Anyway, the paper Toward a Global Phylogeny of the Brassicaceae ((Mol. Biol. Evol. (2006) 23 (11): 2142-2160. doi: 10.1093/molbev/msl087)), which came out a few months before that 2006 blog post on mine on wasabi which I have been revisiting, clearly relegates Eutrema (aka Wasabia) and Armoracia to quite distinct clades of the Brassicaceae (click on the phylogenetic diagram to see for yourself). Thanks to Ruaraidh for tracking that down. Not least because it gives me a chance to also link to yesterday’s post at The Botanist in the Kitchen on the phylogenetic tree of food plants in general, and nevermind that it doesn’t seem to feature wasabi.
Nibbles: Taro value addition, Tree genomics special issue, MSB database, Japanese tubers, Ghana farmer awards, Omani genebank, Mexican cemeteries, Rotation, Root interactions
- Dalo chips! With illustrative goodness.
- Tree genomes! Whole journal-full.
- Seeds! From Kew’s Millennium Seed Bank, that is. In a database. Or two. Online.
- Japanese tubers! If anyone can find the actual video, I’d be very grateful. It’s not here yet. Or here. And I also want to find out more about the mythical Professor Sweet Potato.
- Best farmer awards in Ghana! “He cultivates diverse crops…” Ah but not everyone is happy. Via.
- An Omani genebank! Still “under process”? There was one of sorts 20 years ago when I worked there.
- Day of the Dead! Nuff said.
- Crop rotations! The NY Times plays catchup.
- John Innes Institute video! Explains a couple of papers in Current Biology on root-microbe interactions, where the microbes are both good and bad.