Sonalika searching

A blog post from CIMMYT presented a welcome opportunity to play around with a range of online information resources on wheat varieties, despite the fact that some of the links are broken.

So let’s say I want to find out about a particular variety. Sonalika, for example. I heard about it as being an important older Indian variety, and want to find out more: a pedigree, maybe some performance data, maybe even get some seed. First, I headed on over to the IWIS-Bib database, which “is a supplement to the International Wheat Information System. Each record in IWIS-Bib identifies a publication, and each publication describes a cultivar.” For Sonalika, that returns the citations of 11 references. Good start, though I do now have to get hold of the publications themselves. Maybe in the future I’ll be able to download a PDF, or there will be a link to Google Scholar, or whatever.

Let’s move on. I was not able to find a way of getting performance data for Sonalika from IWIS proper, though I was at the time pretty sure I’d be able to order seed of it from CIMMYT. But, having thought that, I then checked, and Sonalika does not feature in a Genesys search as being conserved at CIMMYT, although you get hits from various other genebanks, including USDA. And there’s plenty of characterization and evaluation data there. I may be doing CIMMYT a disservice here, though. Maybe I didn’t look hard enough, but certainly there was no way of getting easily from a bibliographic hit on a particular variety to evaluation data on it. Which it would be nice to be able to do.

Moving on again, I then headed over to the Genetic Resources Information and Analytical System for Wheat and Triticale (GRIS), the main subject of the blog post I mentioned at the beginning. Entering Sonalika in the little search box gave me a whole lot of very cool stuff. Like a pedigree: II-53-388/ANDES//(SIB)PITIC-62/3/LERMA-ROJO-64. Which you might like to compare with the one on GRIN: II53-388/Andes//Pitic 62 sib/3/Lerma Rojo 64. Reassuringly similar. And accession numbers; which interestingly do not include CIMMYT. So it does look like I wouldn’t be able to get Sonalika from them after all. You also get summary evaluation data and even recommendations for use, which is very handy. And a pedigree diagram, which is, however, frustratingly impossible to export.

So, overall, a not uninteresting though ultimately somewhat disappointing experience, mainly because of the necessity of hopping between websites. But maybe those linkages will come now that a bunch of the people concerned have had a meeting, as described in the post that started all this. Fingers crossed.

Nibbles: Coconut origins, Microbe genebank, Stay-green barley, Sachs may suck, Cap in hand, Wheat information, IITA birthday, Cat art, Poppy biosynthesis, Correcting names

Nibbles: GIBF, Identifiers, Farming animals, Geomedicine, Seed saving, Seeds of Success, CWRs, CORA 2012, Sourdough culture bank, Phenology, Wild Coffea, Cassava conference, Condiments, Gulf truffles, Cashew nut, Home gardens, Tea, Bacterial diversity

Agrobiodiversity education in context

A piece on “Generating the next generation” by Nigel Chaffey in his latest, always indispensable, Plant Cuttings had me trawling around for an hour or so last night amid botanical teaching resources, looking for stuff that might be relevant to agricultural biodiversity. It’s not a great haul, alas.

Teaching Tools in Plant Biology, published by the American Society of Plant Biologists, does have Genetic Improvements in Agriculture, but it’s behind a subscription wall. The American Society of Plant Biologists has pages of resources for K-12 and higher education, but the focus seems to be on biotechnology. Fortunately, the Plant Science TREE (Tool for Research Engaged Education), from the Gatsby Plant Science Summer Schools, does have a useful, freely available section on Plants and People.

I was also momentarily encouraged by seeing an old friend posing in his rice genebank on the homepage of Science & Plants for Schools website:

But the caption he is lumbered with is, weirdly, about the role of plant sciences in “developing cures for diseases.” And anyway nothing happens when you click on him. However, feeding the world is also mentioned (phew), and I was in the end able to find something on genebanks and plant breeding. I wouldn’t call the coverage comprehensive, though. Nor systematically presented.

There is, of course, a place for teaching resources specifically for agrobiodiversity, but one would like to see the subject a little better integrated into the wider plant sciences education universe. Wouldn’t one? Well, not if there are many students like Katie DeGroot.

Nibbles: Traditional medicine, Agroforestry, IK and adaptation, Paprika, Sustainability, Wheat, Rape, Wild foods, Beetroots, Potatoes, Curcurbits, Guar bonanza, Shipwrecked nuts