Sorry, everyone, I should have given a shout-out to the Crops Genomics: Present & Future conference at ICRISAT, which started yesterday. All the usual social media channels are in play, and the tweeting has been considerable already. But what I don’t see, yet, is concrete applications to make the work of genebank managers (as opposed to breeders) easier and more effective. Or is that the future part?
Cool coconut diversity posters
And totally free. Thanks, Roland.
Nibbles: Orphan edition
- The Economist jumps on the genomics-for-orphan-crops bandwagon.
- But is phenomics more important?
- And seed systems, don’t forget seed systems…
- Some of those orphan crops may get an International Day, if India has anything to do with it.
- Immortelle is as orphan as they come, but maybe not in Croatia any more.
- Amaranthus never really went away, not in Mexico.
- Persimmon, meanwhile, is being adopted by the snack industry in the US. But the Japanese are way ahead.
- Some think yerba mate is not orphan enough.
- Is yam an orphan. It depends on what your definition of is is.
- Avocado is the opposite of orphaned in Mexico. It is spoiled rotten.
- Many orphan crops are women’s crops. Case in point: enset.
- Orphan is a relative term, and reversible.
- Exhibit B: sweet potato.
- People often take their orphan crops with them. Even in antiquity.
- Coconut is fast becoming an orphan in Tanzania.
- With 32 cultivars available to grow in Louisiana alone, nobody can say lettuce is an orphan.
- Mexico and Brazil collaborate on crop diversity conservation. Including orphan crops?
- One thing that is probably not a huge priority for orphan crops is their wild relatives. Just saying.
- Anyway, we’re going to need all the orphan crops we can get if James Cameron’s titanic vegetarian utopia is to come true.
Brainfood: Setaria diversity, Planteome, Cowpea diversity, Fertile Crescent CWR, Beer flavour, Marula diversity, Wild dates
- Genetic Structure of Foxtail Millet Landraces. China is the centre of diversity, and diversity structured geographically there.
- The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics. A sort of ontology of ontologies.
- Genetic diversity and structure of Iberian Peninsula cowpeas compared to world-wide cowpea accessions using high density SNP markers. Iberian material all falls into 1 (S Europe-N Africa) of 4 worldwide groups.
- Setting conservation priorities for crop wild relatives in the Fertile Crescent. 220 priority species.
- Effects of Barley (Hordeum vulgare L.) Variety and Growing Environment on Beer Flavor. It’s not just the hops.
- Molecular Characterization of Sclerocarya birrea ICRAF Field Genebank Collections. Even the duplicates identified could be good for something.
- The Domestication Syndrome in Phoenix dactylifera Seeds: Toward the Identification of Wild Date Palm Populations. Fancy maths shows there may be actual wild date palms in Oman.
Brainfood: Coffee apocalypse, Barley journey, Haplotype cores, Pollinator conservation, Rooting for tubers, Aussie CWR, European veggies, Capsicum evolution, Wheat genome
- Climate change adaptation of coffee production in space and time. There’s a plan, at least for Nicaragua.
- Journey to the east: Diverse routes and variable flowering times for wheat and barley en route to prehistoric China. Growing in diverse environments pre-adapted barley for its shift to spring sowing and move eastwards to China.
- Capturing haplotypes in germplasm core collections using bioinformatics. Fortunately, “the number of accessions necessary to capture a given percentage of the haplotypic diversity present in the entire collection can be estimated.”
- Pollinator Diversity: Distribution, Ecological Function, and Conservation. 350,000 species!
- Roots, Tubers and Bananas: Planning and research for climate resilience. Much the same, but faster.
- Priorities for enhancing the ex situ conservation and use of Australian crop wild relatives. Go north, young woman.
- Consequences of climate change for conserving leafy vegetable CWR in Europe. Go, err, northwest.
- Phylogenetic relationships, diversification and expansion of chili peppers (Capsicum, Solanaceae). Monophyletic clade which originated along the Andes of W to NW South America and spread clockwise around the Amazon.
- The Aegilops tauschii genome reveals multiple impacts of transposons. The D genome bites the dust.