- Chemical and microbial properties of Chinese traditional low-salt fermented whole fish product Suan yu. “The values of Enterobacteria and Pseudomonads were under the detection limits in six different brands” is about the best that can be said for it.
- Tapping into yeast diversity. Some new, diverse wild lineages in China may tell us important things about yeast ecology, evolution and domestication.
- Genome size variation among sex types in dioecious and trioecious Caricaceae species. Lots of retrotransposons, and sex chromosomes in some species.
- The Archaic Diet in Mesoamerica: Incentive for Milpa Development and Species Domestication. The diet preceded the crops.
- Genetic diversity and population structure in the rare Algodones sunflower (Helianthus niveus ssp. tephrodes). Low diversity overall, but some populations quite distinct. Which tells you about how to conserve it.
- Albania, the domestication country for pomegranate (Punica granatum L.). Well, maybe.
- Mixtures of genetically modified wheat lines outperform monocultures. Two transgenes are better than one.
- Climate change impacts on crop productivity in Africa and South Asia. -8% overall. The surprise? Sorghum declines more than maize in Africa, less in S Asia.
Nibbles: Using genebanks, Fonio collecting, Bean breeding, Caribbean PGR networking, Cotton breeding, Conflict prevention, Beer foam characterization, Soil microbes, 7ITS
- IRRI DG on the Kasalath story and its wider implications.
- French collect fonio. Glad someone is.
- CIAT bean breeder complains about having too much diversity to play with.
- Caribbean needs a regional genebank, catalogue of germplasm. What, still?
- Improving cotton in Texas one (or two) chromosomes at the time.
- Managing livestock-predator conflicts. The name of the game is prevention.
- Candidate gene for improved beer foam identified. I knew all that genomics stuff would come in useful eventually.
- Diverse root biome helps plants survive drought.
- Gear up for the 7th International Triticeae Symposium, or 7ITS as it is widely, if unfortunately, known.
Benefits of agricultural biodiversity explored
Two recent papers — one a report of a long-term experiment, the other a literature review — point to the benefits of diversity in agricultural systems. Adam Davis and his colleagues report that Increasing Cropping System Diversity Balances Productivity, Profitability and Environmental Health, ((Davis AS, Hill JD, Chase CA, Johanns AM, & Liebman M (2012). Increasing cropping system diversity balances productivity, profitability and environmental health. PloS one, 7 (10) PMID: 23071739)) a result that has already triggered all sorts of commentary on the web. By contrast, John Tooker and Steven Frank’s paper Genotypically diverse cultivar mixtures for insect pest management and increased crop yields ((Tooker, J., & Frank, S. (2012). Genotypically diverse cultivar mixtures for insect pest management and increased crop yields Journal of Applied Ecology, 49 (5), 974-985 DOI: 10.1111/j.1365-2664.2012.02173.x)) has not yet created much of a stir. But that’s OK. We’re equal opportunity bloggers here.
Lengthen those rotations
Davis et al. report on an experiment that ran from 2003-2011 at Marsden Farm, Boone, Iowa. (That’s it in the photograph at the top.) They compared three different regimes: a standard 2-year corn (maize)-soybean rotation, with ample nitrogen and herbicides to keep the weeds down; a 3-year rotation, adding a small grain (triticale and oats) with red clover in the third year; and a 4-year rotation that added an additional year of alfalfa after the small grain.The two more-diverse systems received some fertilisers and herbicides, but only as much as was needed, rather than at rates matching those of surrounding commercial farms.
The paper is open access, so you can go and read the whole thing, or just focus on the crucial results neatly depicted in this figure:
This shows 10 variables, with the levels of each treatment (rotation-length, or system diversity) normalised so that whichever has the top score is 1.0. Crucially, there are no significant differences among the treatments in profit, harvested crop mass, soybean yield, maize yield, or weed control. There are big differences in the toxicity of run-off water (200 times lower), herbicide use, nitrogen use, energy use and labour, the only variable in which the more complex systems scored higher than the less (and in an economy looking for jobs, that may be no bad thing).
One of the more interesting results, given the tendency to assume that greater diversity in a farming system inevitably stabilises yield, is that it doesn’t. In fact, “[v]ariance in mean harvested crop mass was greater in the 3-yr and 4-yr rotations than in the 2-yr rotation”. Ah but …
Conversely, cropping system diversification was associated with lower variance in profit during the established phase of the study. Variance in profit from 2006 to 2011 was lower in the 3-yr and 4-yr rotations than in the 2-yr rotation.
It would be nice to see more detail on this stability of profit, even in the face of less stable overall yields.
The other crucial point from this experiment is that the researchers didn’t turn their back on either synthetic nitrogen fertiliser or herbicides. They did, however, make much less use of them. And yet yields were maintained.
In the more diverse rotations, small amounts of synthetic agrichemical inputs thus served as powerful tools with which to tune, rather than drive, agroecosystem performance.
Reintegration of crop and livestock production, as represented by the forage legumes and manure applications present in the more diverse systems, is not simply another aspect of cropping system diversification. Instead, it embodies an important principle in sustainable agriculture: system boundaries should be drawn to minimize externalities. Animal manure is produced regardless of whether feed grains are shipped to centralized concentrated animal feeding operations, or produced within integrated crop-livestock farming operations. In the former case, the manure may become a waste product and water pollutant if quantities exceed available land area for field application [33], whereas in the latter case, it contributes directly to crop nutrient requirements, improves soil quality, and reduces fossil fuel subsidies associated with grain transport and external N fertilizer inputs [14].
Battling pests with biodiversity
Unlike Davis et al., Tooker and Frank present a review of existing evidence. Their article is behind a paywall, but to be honest unless you’re looking for a quick annotated bibliography on this important subject, I wouldn’t bother coughing up. The review is comprehensive enough (although some material is unaccountably missing), the goal being to demonstrate that despite the convergence of
[m]ultiple lines of evidence … to support the potential of intraspecific variation to contribute to improve insect pest control … very little work has sought to develop empirical support or viable implementation practices in agricultural systems. Thus, implementation of this practice is limited.
And yes, there really are multiple lines of evidence that genotypic diversity (variation among varieties) and genetic diversity (variation at the variety population level) generally diminish the impact of pests. Not as much as for diseases, mind, but enough to wonder why there hasn’t been as much in the way of implementation. The effects may be bottom up, diverse mechanisms that reduce the ability of pests to find suitable hosts, or top down, equally diverse mechanisms that act through natural enemies of the pests.
Tooker and Frank offer a helpful summary diagram, which makes it a little easier to conceptualise the different ways in which diversity can protect against pests. The results, though, can be elusive:
For example, in separate experiments, mixtures of two oat varieties or five corn varieties were found to harbour significantly fewer pests (aphids and leafhoppers, respectively) than monotypic stands, but this effect was only detected when pest populations were large.
Digging back into the literature, they uncover several studies that at the very least ought to encourage fresh research.
[W]hile much remains to be learned about the role of genotypic diversity in ecological interactions and ecosystem function, the existing evidence is particularly tantalizing for agriculture because productivity, resistance to herbivores and resiliency to abiotic stress are essential features of sustainable crop production. Moreover, genotypic diversity could be implemented with relatively minor changes to agricultural practice. If theory and empirical results continue to support the strong effects of genotypic diversity for plant productivity, a simple new approach to farming may transform planting strategies and agricultural productivity.
And there, really, is the value of both papers. Instead of taking an ideological stand on “sustainable intensification,” whatever that may be, they both show ways in which agricultural biodiversity could be deployed to help farm systems provide more, more sustainably.
Brainfood: Pedodiversity, Rice and CC, Bean domestication, Cassava mealybug, Grape relationships, Habitat conservation, Extinction and CC, Local provenance, Speciation, Breeding for climate change, Melon diversity, Eucalypt mating, Diverse croppping systems
- Archive and refugia of soil organisms: applying a pedodiversity framework for the conservation of biological and non-biological heritages. They want to set up a network of soil reserves. To conserve the likes of dung beetles, among other things (see last week’s Brainfood). Someone will no doubt mash this up with nature reserves and other protected areas in due course.
- Climate warming over the past three decades has shortened rice growth duration in China and cultivar shifts have further accelerated the process for late rice. One degree increase in temperature translates to about a 4 day shortening of growth period. But the problem would not be so bad if short-duration cultivars were not being increasingly used. No, I don’t fully get it either, but it seems interesting.
- Multiple origins of the determinate growth habit in domesticated common bean (Phaseolus vulgaris). The gene in question, part of the domestication syndrome, has been messed about in a variety of distinct and independent ways.
- The Cassava Mealybug (Phenacoccus manihoti) in Asia: First Records, Potential Distribution, and an Identification Key. Bad news for “the southern end of Karnataka in India, the eastern end of the Ninh Thuan province in Vietnam, and in most of West Timor in Indonesia.” No resistance. Yet.
- Genetic relationship between Chinese wild Vitis species and American and European Cultivars based on ISSR markers. It is limited. That goes for the wilds too.
- Synergies and trade-offs between ecosystem service supply, biodiversity, and habitat conservation status in Europe. What’s good for the environment is good for the environment. Or if you prefer the non-smartass version, get it from the horse’s mouth…
- Development of best practices for ex situ conservation of radish germplasm in the context of the crop genebank knowledge base. See the results for yourself.
- How does climate change cause extinction? Not so much because of intolerance to high temperatures as due to disruption of relationships with other species, as it turns out. But it’s a small sample.
- Testing the “Local Provenance” Paradigm: A Common Garden Experiment in Cumberland Plain Woodland, Sydney, Australia. No difference between locally sourced and more “exotic” provenances. Bang goes that paradigm.
- Mapping the genomic architecture of ecological speciation in the wild: does linkage disequilibrium hold the key? Clever shortcut allows identification of key genes separating phenotypically distinct but admixing species. I think. It’s complicated.
- Breeding Strategies for Adaptation of Pearl Millet and Sorghum to Climate Variability and Change in West Africa. Anything that keeps diversity in the system, basically.
- Estimation of phenotypic divergence in a collection of Cucumis melo, including shelf-life of fruit. Old-fashioned morphological characterization of small Indian collection confirms distinction between botanical varieties. Not many people hurt.
- Pollen diversity matters: revealing the neglected effect of pollen diversity on fitness in fragmented landscapes. Fragmentation means lower pollen diversity in Eucalyptus sp., means lower progeny fitness, and not just because of inbreeding.
- Increasing Cropping System Diversity Balances Productivity, Profitability and Environmental Health. So let me get this straight. You mean to tell me that a little bit of industrial agriculture (synthetic inputs) can combine with a little bit of ecoagriculture (cropping diversity) to give you something that’s kinda better than both?
Nibbles: Weed resistance, Mango diversity, Breeding, Climate change
- Here’s a turnup for the books: kill weeds in many different ways to prevent the evolution of resistance.
- The Society for the Conservation of Mango Diversity. my kind of society.
- “The overall aim of the IICI is to bring improved crops that yield more per acre, are richer in essential nutrients and resistant to disease, insects and drought to small farmers in developing countries in Africa, Asia and Latin America.” Can I go home now?
- Extinction news: If the heat don’t get you, the hunger will.