Database hell squared beckons?

Colleagues at FAO and Bioversity International have a paper out in the Journal of Food Composition and Analysis entitled “Food composition is fundamental to the cross-cutting initiative on biodiversity for food and nutrition.” The cross-cutting initiative in question is that on biodiversity for food and nutrition which the CBD asked FAO to lead, in collaboration with Bioversity. And by the “food composition” of the title the authors mean databases which document the nutritional value of foods not just at the level of species, as currently, but of the different varieties and cultivars within species. These will in a way be a central pillar of the initiative. We’ve talked here before about the extensive variation that can exist among varieties in nutritional composition, for glycaemic index, say. And we’ve repeatedly highlighted the work of Lois Englberger and her Pohnpei colleagues in this field, for example. So it is good to hear that food composition tables and databases will be improved to allow the inclusion of infra-specific data. Populating the databases will be something else, of course. The data will need to come from existing genetic resources databases, which currently do not as a rule contain much in the way of this kind of information and are not necessarily equipped to handle it. So this initiative will involve a marriage between two database communities, that of nutritionists and that of genebanks. A difficult trick to pull off. Necessary, and long overdue, but difficult. Stay tuned.

Aurochs alive and well

Well, not quite. But some of their DNA is. A paper just out in PLoS ONE has found two mitochondrial DNA haplogroups (the ones labelled R and P in the diagram below) which apparently got into Italian local breeds from “European aurochsen [haplogroup E] as the result of sporadic interbreeding events with domestic herds grazing in the wild.” Some of these breeds are rare and marginalized, though, so even the last remnants of the aurochs might be in danger.

journalpone0005753g002

Why biodiversity matters

Shahid Naeem’s 1 article “Lessons from the Reverse Engineering of Nature” is long, complicated and, in the end, a bit too esoteric for my taste. It also contains a couple of unnecessarily dismissive references to genebanks. But it is worth sticking with for a section which occurs about half way through, and one paragraph in particular.

After describing a number of experiments in which researchers re-created a particular ecosystem, varying only the overall level of biodiversity (this is what he means by reverse engineering nature), Naeem says:

In spite of the limited number of species and tiny numbers of combinations involved, these studies have been stunningly successful at demonstrating that greater diversity means more biomass, more production, greater retention of nutrients, greater resistance to invasive species, greater resistance to the spread of plant pathogens and greater stability.

He goes on to quote a formal meta-analysis, but that succinct summary is definitely worth having to hand the next time someone asks you what species are good for. Naeem is pretty good on the mechanisms too.

Biodiversity loss can affect ecosystem functioning for many reasons, but two keep emerging from the research. First, the more species one removes, the greater the probability that an extraordinarily important species will be lost. But there is a second reason that biodiversity loss reduces ecosystem function: complementarity. The more species you have, the more ways they make use of limited resources such as light, water, nutrients and space.

And what goes for ecosystems goes for agroecosystems, right? Right.