- R package for roaming around the web and collating taxonomic information.
- Cool tool for climate matching and tree restoration seed targeting in New South Wales. Probably needs more than a Nibble.
- Results of webinar on ‘Implementation of Access to Plant Genetic Resources and Benefit Sharing (ABS)’ in India. With video goodness.
- The whole Colombian seed conservation network on one annoying website.
- Those really old dates bear fruit at last. Do you remember the paper on the genetic diversity aspects?
- Growing a rye landrace on a Swedish island for organically certified seed. And more.
Brainfood: Millet yields, Millet review, Taro genome, Salty sunflower, WorldVeg network, Phylorelatives, Bovine domestication, Diet quality, Nutrition metrics, Aztec diets, Complementary conservation, Post-2020, Climate change breeding
- Using remote sensing to assess the effect of trees on millet yield in complex parklands of Central Senegal. Tree cover in the landscape of up to 35% increases pearl millet yields.
- Genetic and genomic resources for improving proso millet (Panicum miliaceum L.): a potential crop for food and nutritional security. All that’s missing is the investment. And, possibly, the trees.
- A high-quality genome of taro (Colocasia esculenta (L.) Schott), one of the world’s oldest crops. Has benefitted from two whole-genome duplications. Now that this investment has been made, I expect to see the crop take off.
- Key traits and genes associate with salinity tolerance independent from vigor in cultivated sunflower. There is a way to increase yield under salinity stress without affecting yield under more benign conditions. Millets and taro should take note.
- Sustainable Cucurbit Breeding and Production in Asia Using Public–Private Partnerships by the World Vegetable Center. WorldVeg presents improved lines and F1 hybrids of bitter gourd (Momordica charantia), tropical pumpkin (Cucurbita moschata), ridge gourd (Luffa acutangula) and sponge gourd (Luffa cylindrica) to private sector breeders at Crop Field Days. Everybody wins. But are there any private sector breeders of millets and taro to take note?
- Crop Wild Phylorelatives (CWPs): phylogenetic distance, cytogenetic compatibility and breeding system data enable estimation of crop wild relative gene pool classification. Predicting crossability of a crop with its wild relatives from whatever data is on hand.
- Evolution and domestication of the Bovini species. They’ve been very promiscuous, and the results can be summarized in one illustration.
- Defining diet quality: a synthesis of dietary quality metrics and their validity for the double burden of malnutrition. Seven dietary metrics out there, none of them perfect.
- Assessing nutritional, health, and environmental sustainability dimensions of agri-food production. Here’s how to make nutrition and health metrics better. Maybe these guys should get together with the above?
- Aztec diets at the residential site of San Cristobal Ecatepec through stable carbon and nitrogen isotope analysis of bone collagen. The men drank more pulque than the women. I wonder if 500 years from now they’ll be judging us like this.
- The unique role of seed banking and cryobiotechnologies in plant conservation. Good summary of the different ex situ approaches available for plants, none of them perfect. The existence of an Exceptional Plant Conservation Network and a Project Baseline for seed genebanks was news to me.
- Making the post-2020 global biodiversity framework a successful tool for building biodiverse, inclusive, resilient and safe food systems for all. The CBD needs to learn to love mixed, diverse agricultural landscapes. And genebanks, natch. Maybe it should invest in dietary metrics.
- The Role of Genetic Resources in Breeding for Climate Change: The Case of Public Breeding Programmes in Eighteen Developing Countries. Business as usual, except more intense. Oh, and perhaps more use of landraces. No word on dietary metrics.
Diversify your landscapes redux
I originally published this post on 29 July, but then Dr Baudron pointed to two additional papers on Twitter, so I’m re-upping with a fifth bullet point.
There’s a nice series of papers on the benefits of diverse landscapes in Ethiopia from Frédéric Baudron of CIMMYT and others.
Just in case this tweet disappears, or whatever, here are the links:
- Wheat yields and zinc content are higher closer to forests because of elevated organic matter in the soil.
- Diets are also more diverse nearer forests.
- Livestock (but not crop) productivity is higher nearer forests, and smallholder systems generally more sustainable.
- Bird diversity benefits from tree cover too, and that provides important ecosystem services to smallholders.
- Even limited reforestation in the surrounding landscape is associated with higher wheat yields in simulations, and you can potentially measure it from space.
Brainfood: Niche modelling, Post-2020 double, CC & productivity, Wild cacao, Popcorn data, Regulations, Duplicates, Oz ag, Kenya diversity, Stressed wheat, DUS, Connectivity, Population differentiation
- ntbox: an R package with graphical user interface for modeling and evaluating multidimensional ecological niches. Yes, another one, deal with it.
- Global targets that reveal the social–ecological interdependencies of sustainable development. The post-2020 framework should not have separate targets for social and ecological outcomes.
- Integrating agroecological production in a robust post-2020 Global Biodiversity Framework. Case in point?
- The Historical Impact of Anthropogenic Climate Change on Global Agricultural Productivity. We’ve lost a decade of productivity growth since 1961.
- Exploring the diversity and distribution of crop wild relatives of cacao (Theobroma cacao L.) in Colombia. Habitat protection needed.
- The Global Popcorn Project. Here comes the data! And more.
- Editorial: Leeway to Operate With Plant Genetic Resources. Research Topic on ABS, biosafety and IPR regulations and how they affect use of PGR.
- SNP Markers and Evaluation of Duplicate Holdings of Brassica oleracea in Two European Genebanks. Out of 10 pairs of accessions with similar names in the Russian and Nordic genebanks, 5 showed genetic differences, and 3 of these also morphological differences.
- History of crop introductions, breeding and selection in Australia: The 140 years from 1788. But at what cost?
- The welfare effects of crop biodiversity as an adaptation to climate shocks in Kenya. Crop diversity mitigates income variability risk caused by climate.
- Genetics of yield, abiotic stress tolerance and biofortification in wheat (Triticum aestivum L.). Well that seems sorted then.
- Is plant variety registration keeping pace with speed breeding techniques? No?
- Global Cropland Connectivity: A Risk Factor for Invasion and Saturation by Emerging Pathogens and Pests. Nice maps of ease of movement among different cultivation areas of vegetatively propagated crops. Could be used to model movement of genetic resources as well as of pests/diseases?
- Global patterns of population genetic differentiation in seed plants. More population differentiation for tropical, mixed‐mating, non‐woody species pollinated by small insects, and lower for temperate, outcrossing trees pollinated by wind. Could perhaps be mashed up with this fragmentation database.
Brainfood: Global Food Security, Neutral diversity, Bottlenecks, Slovenian lettuce, Swedish apples, Mungbean diversity, Crop suitability, Breeding graph, Herding diet, Cool shit, Seed storage double, Wild quinoa, Mighty wind
- A research vision for food systems in the 2020s: Defying the status quo. Research is necessary but not sufficient.
- Dismantling a dogma: the inflated significance of neutral genetic diversity in conservation genetics. Not all genetic diversity is created equal.
- A re‐evaluation of the domestication bottleneck from archaeogenomic evidence. Not so much a single bottleneck “event” on domestication, as serial bottlenecks post-domestication. Another dogma dismantled?
- Morphological and genetic diversity of Slovene lettuce landrace ‘Ljubljanska ledenka’ (Lactuca sativa L.). Not all iceberg is created equal.
- Genetic Status of the Swedish Central collection of heirloom apple cultivars. Neutral diversity is not completely useless, though?
- Understanding genetic variability in the mungbean (Vigna radiata L.) genepool. It may not be neutral variation, but it’s not associated with geography. If you see what I mean.
- A Land Evaluation Framework for Agricultural Diversification. Soil and climate data –> fancy maths –> pretty good prediction of where you find a crop.
- A unifying concept of animal breeding programs. You can describe any breeding programme by using graph theory. But would it help?
- Molecular and isotopic evidence for milk, meat, and plants in prehistoric eastern African herder food systems. Chemical and isotope analysis of lipids on ceramic shards shows early herding societies had a pretty diverse diet.
- Pre-Clovis occupation of the Americas identified by human fecal biomarkers in coprolites from Paisley Caves, Oregon. Lipids again, this time at the other end of the process, and of the world.
- Identification of novel seed longevity genes related to oxidative stress and seed coat by genome‐wide association studies and reverse genetics. Seeds need to take their antioxidants.
- Evaluation of genetic integrity of pearl millet seeds during aging by genomic-SSR markers. Loss of viability leads to loss of diversity.
- Geographical distribution of quinoa crop wild relatives in the Peruvian Andes: a participatory mapping initiative. Cultivated land is as important as more “natural” ecosystems for quinoa wild relatives.
- Global wind patterns and the vulnerability of wind-dispersed species to climate change. In the tropics, and in the lee of mountains, wind-dispersed species will find it more difficult to reach places with suitable future climates.