- Understanding the role of biodiversity in the climate, food, water, energy, transport and health nexus in Europe. Meta-analysis shows that a lot of things people do affect biodiversity negatively, yet biodiversity affects most things people want to do positively.
- Food Systems Interventions for Nutrition: Lessons from 6 Program Evaluations in Africa and South Asia. Have a strong theory of change, assess a range of outcomes, triangulate methods, including those from other fields, use adaptive and flexible evaluation designs, and document everything transparently. I wonder how many of these boxes the studies analysed above ticked.
- Geospatial evaluation of the agricultural suitability and land use compatibility in Europe’s temperate continental climate region. Europe has run out of land usable for crops, but some currently used land is being used for the wrong crops.
- Beyond yield and toward sustainability: Using applied ecology to support biodiversity conservation and food production. But does “suitability” mean “sustainability”? Probably not so much, but it should.
- Global synthesis of cover crop impacts on main crop yield. Cover crops are good for yield. But didn’t we just say we should go beyond yield?
- Editorial: Trends and perspectives for the use of crop wild relatives in crop breeding. Way beyond yield…
- Global potential distributions and conservation status of rice wild relatives. Still a lot of work to do to save rice wild relatives so they can be used to, you know, move beyond yield.
- Collecting and managing in situ banana genetic resources information (Musa spp.) using online resources and citizen science. Can probably say the same about banana wild relatives as was said above about rice, but I don’t see as much scope for citizen scientists getting into wild rice.
Forgotten crops in the limelight
The paper “Forgotten food crops in sub-Saharan Africa for healthy diets in a changing climate” by Maarten van Zonneveld, Roeland Kindt, Stepha McMullin, Enoch G. Achigan-Dako, Sognigbé N’Danikou, Wei-hsun Hsieh, Yann-rong Lin, and Ian K. Dawson has won the PNAS 2023 Cozzarelli Prize for the best paper of the year in Applied Biological, Agricultural, and Environmental Sciences. Here’s the abstract:
As the climate changes, major staple crop production in sub-Saharan Africa becomes increasingly vulnerable. Underutilized traditional food plants offer opportunities for diversifying cropping systems. In this study, the authors used climate niche modeling to assess the potential of 138 traditional food plants to diversify or replace staple crop production in sub-Saharan Africa by 2070. The authors report that staple crops may no longer be able to grow at approximately 10% of locations by 2070. Further, the authors identified 58 traditional crops that provide complementary micronutrient contents suitable for integration into staple cropping systems under current and projected climatic conditions. The results suggest that diversifying sub-Saharan African food production with underutilized crops could improve climate resilience and dietary health.
And here’s a video explaining the results:
Brainfood: Software edition
- NBPGR-PDS: A Precision Tool for Plant Germplasm Collecting. Fancy software can manage germplasm collecting info in the field.
- The role of genotypic and climatic variation at the range edge: A case study in winegrapes. Fancy software and analysis can predict how different grape varietals could expand in distribution under climate change.
- ClimMob: Software to support experimental citizen science in agriculture. Fancy software can help plan, manage and analyze large-scale, farmer-led germplasm evaluation trails.
- Herbarium specimen label transcription reimagined with large language models: Capabilities, productivity, and risks. Fancy software can transcribe herbarium labels.
- OliVaR: Improving olive variety recognition using deep neural networks. Fancy software can recognize olives.
- Reconstructing historic and modern potato late blight outbreaks using text analytics. Fancy software can track a pest epidemic.
- Evaluating responses by ChatGPT to farmers’ questions on irrigated lowland rice cultivation in Nigeria. Fancy software can be better than extension workers.
- Simulating pollen flow and field sampling constraints helps revise seed sampling recommendations for conserving genetic diversity. Fancy software and analysis can suggest changes to seed sampling strategies to take into account limited pollen flow.
Nibbles: PlantSearch, Ranking apples, Pumpkin pix, Fruit pix, Livestock maps, Impact
- Searching for plants in botanic gardens.
- Searching for the best apple.
- Searching for pumpkins and squashes.
- Searching the Pomological Watercolor Collection.
- Searching for livestock.
- Searching for varietal turnover. And other kinds of impact.
Brainfood: Maize, Chickpea, CWR, Canola, Coconut, Avocado, Eggplant, Carrot, Watermelon, Citrus, Potato, Pearl millet, Roses
- A New Methodological Approach to Detect Microcenters and Regions of Maize Genetic Diversity in Different Areas of Lowland South America. Multiple disciplines identify 4 microcenters of maize diversity in the lowlands of South America.
- Historical Routes for Diversification of Domesticated Chickpea Inferred from Landrace Genomics. Genomics identifies both Indian and Middle Eastern traces in Ethiopian chickpeas.
- Crop wild relatives in Lebanon: mapping the distribution of Poaceae and Fabaceae priority taxa for conservation planning. Spatial analysis identifies a couple of key ex situ and in situ conservation areas for CWR in Lebanon.
- Analysis of gaps in rapeseed (Brassica napus L.) collections in European genebanks. Spatial analysis identifies a few key ex situ and in situ conservation areas for rapeseed wild relatives in Europe.
- Genomic and population characterization of a diversity panel of dwarf and tall coconut accessions from the International Coconut Genebank for Latin America and Caribbean. Characterization of various sorts identifies different Atlantic and Pacific coconut genepools in the Western Hemisphere.
- Pleistocene-dated genomic divergence of avocado trees supports cryptic diversity in the Colombian germplasm. Genomics identifies a uniquely Colombian avocado genepool.
- Analysis of >3400 worldwide eggplant accessions reveals two independent domestication events and multiple migration-diversification routes. Genomics identifies separate Southeast Asia and Indian areas of domestication, and limited exchange between them.
- Population genomics identifies genetic signatures of carrot domestication and improvement and uncovers the origin of high-carotenoid orange carrots. Genomics identifies wester-central Asia as the area of carrot domestication in the Early Middle Ages, and western Europe as the place where the orange variant was selected in the Renaissance.
- A Citrullus genus super-pangenome reveals extensive variations in wild and cultivated watermelons and sheds light on watermelon evolution and domestication. Pangenomics identifies a gene in wild Kordofan melons as promoting the accumulation of sugar in watermelon.
- Pangenome analysis provides insight into the evolution of the orange subfamily and a key gene for citric acid accumulation in citrus fruits. Pangenomics identifies south central China as the primary centre of origin of the genus Citrus.
- Pangenome analyses reveal impact of transposable elements and ploidy on the evolution of potato species. Pangenomics identifies wild species from North and Central America as having lots of genes for abiotic stress response, but also fewer transposable elements.
- Pangenomic analysis identifies structural variation associated with heat tolerance in pearl millet. Pangenomics identifies the key genes and structural variations associated with pearl millet accessions from the most hot and dry places.
- Dark side of the honeymoon: reconstructing the Asian x European rose breeding history through the lens of genomics. Genomics and other data identifies a shift from a European to a mainly Asian genetic background in cultivated roses during the 19th century, leading to a narrowing of genetic diversity.