- Assessment of genetic relationships between cultivated arracacha (Arracacia xanthorrhiza Bancr.) and its wild close relatives in the area of domestication using microsatellite markers. Lots more variation in the wild, natch.
- Exploring Relationships between Biodiversity and Dietary Diversity in the Mediterranean Region: Preliminary Insights from a Literature Review. There has been an increase in dietary diversity, but of the wrong sort of diversity.
- Special issue Of Small Ruminant Research on “Genetic diversity of small ruminants in Asia”. From the Punjab Urial sheep to the goats of Myanmar.
- Genetic diversity of flax accessions originating in the Alpine region: a case study for an ex situ germplasm evaluation based on molecular marker. Past genebank conservation hasn’t been perfect.
- Enhancing genetic gain in the era of molecular breeding. It all starts with genetic variance. Hello, genebanks!
- Crops In Silico: Generating Virtual Crops Using an Integrative and Multi-scale Modeling Platform. Factor in gene editing and goodbye genebanks.
- Unconscious selection drove seed enlargement in vegetable crops. And not only vegetables, cereals too. But remember African rice?
- Palm economic and traditional uses, evolutionary history and the IUCN Red List. Globally, the more threatened palms are the less used.
- Impact of Climate Change, Weather Extremes, and Price Risk on Global Food Supply. The effect is not just on production, but also price.
- Identifying the landscape drivers of agricultural insecticide use leveraging evidence from 100,000 fields. In Kern County, California, crop diversity decreases insecticide us. But…
Getting to grips with rice in Europe
A little more on that RiceAtlas that I blogged about a couple of days ago. I managed to download the shapefile of rice growing areas, and open it in Google Earth. I then imported the Genesys rice dataset, and zoomed in on Europe. Here’s what those two things together look like.
Definitely a few issues. I’m not too worried about the accessions in northern Europe. Those are probably just wrong passport data. But what about all those in Turkey which are also outside putative rice growing areas? Are those passport data mistakes too, or is RiceAtlas missing something?
Seed banking resources
Did not realize that BGCI have a very useful Seed Conservation Hub on their website where they have collated resources and provided training modules on the basics of seed banking (in 4 languages).
Unique digital identifiers everywhere
A recent letter in Nature:
Members of the Consortium of European Taxonomic Facilities have adopted a consistent citation system for an estimated 20 million biological and geological specimens from European collections. We encourage researchers, publishers and other institutions to engage with this initiative by citing the full specimen identifier in their publications and data sets. These specimens provide reference material for research on evolution, genetics, mineralogy, ecology and taxonomy — hence the need for a reliable identification system for citation (see A. Güntsch et al. Database 1, bax003; 2017). Our system assigns a unique and permanent Uniform Resource Identifier (URI) to each specimen. It follows Linked Open Data principles (see www.w3.org/tr/ld-bp) by including a redirection facility to human- and machine readable representations of the specimen. It also gives credit to the collectors and custodians. For example, the alpine plant specimen Leptinella scariosa Cass., held by the Royal Botanic Garden in Edinburgh, UK, and collected in Chile by Charles Darwin in 1834, is referred to by the URI http://data.rbge.org.uk/ herb/E00070244.
Quentin Groom, Botanic Garden Meise, Belgium.
Roger Hyam, Royal Botanic Garden Edinburgh, UK.
Anton Güntsch, Botanic Garden and Botanical Museum, Berlin, Germany.
Genebanks are doing something very similar.
Brainfood: CWR prioritization, CWR data, Yam core redux, Traditional landscape value, African rice domestication, Digital conservation, First farmers, Revived breed, Mitigation targets, Zoonoses, Population, JEB on legumes
- Broadening the Base, Narrowing the Task: Prioritizing Crop Wild Relative Taxa for Conservation Action. Use socioeconomic value of crop, and potential usefulness and threat status of relative.
- Germinate 3: Development of a Common Platform to Support the Distribution of Experimental Data on Crop Wild Relatives. Useful in determining the second of the above.
- Re-defining the yam (Dioscorea spp.) core collection using morphological traits. Cleaning up the core.
- “Things are different now”: Farmer perceptions of cultural ecosystem services of traditional rice landscapes in Vietnam and the Philippines. 73 indicators for the contribution of landscapes to culture, aesthetics, and local knowledge.
- A single-nucleotide polymorphism causes smaller grain size and loss of seed shattering during African rice domestication. You want no shattering? You also get smaller seeds. Like it or edit it.
- Digital conservation: An introduction. Brave new world… Special issue of Ambio.
- The Genomic History Of Southeastern Europe. Souther Greek Neolithic farmers not same as other European Neolithic farmers.
- Genomics of a revived breed: Case study of the Belgian campine cattle. Racial impurities are confined to a few farms.
- Reducing emissions from agriculture to meet the 2 °C target. We’re doomed.
- Conservation of biodiversity as a strategy for improving human health and well-being. By keeping animals and their nasty diseases away from people, we’re not talking communing with Nature here.
- The interaction of human population, food production, and biodiversity protection. Minimise the interaction.
- Nature’s pulse power: legumes, food security and climate change. Special issue of Journal of Experimental Botany on legumes. Eat up your beans!