- Incorporating knowledge uncertainty into species distribution modelling. Not sure about this.
- A mycorrhizal revolution. “Fine root endophytes are arbuscule-forming fungi unexpectedly placed in Mucoromycotina.” Wow. I think.
- Genetic Diversity within Snap Beans and Their Relation to Dry Beans. Snap beans came from dry beans, but maybe more than once and from both Andean and Mesoamerican genepools, and now they make up 8 genepools.
- Two decades of evolutionary changes in Brassica rapa in response to fluctuations in precipitation and severe drought. It matters when you collect germplasm.
- Agricultural intensification, dietary diversity, and markets in the global food security narrative. What if it’s intensification through diversification, though? Didn’t think of that, did you?
- Seed characteristic variations and genetic structure of wild Zizania latifolia along a latitudinal gradient in China: implications for neo-domestication as a grain crop. Crop wild relative that is also a crop might be a good candidate to become another crop.
- The Genome Sequence of the Wild Tomato Solanum pimpinellifolium Provides Insights Into Salinity Tolerance. It’s all in the inositol pathway.
- Not all data are equal: Influence of data type and amount in spatial conservation prioritisation. Follow the money. Ok, to unpack that, read this.
- A Horizon Scan of Emerging Issues for Global Conservation in 2019. Biotechnological advances in crop breeding may impact insects and land use.
- Multiproxy evidence highlights a complex evolutionary legacy of maize in South America. Linguistics, archaeology and genetics say maize left Mexico semi-domesticated, was finished off and diversified in Amazonia.
- Assessing the Role of Cattle in Sustainable Food Systems. They still have one.
- A male-expressed rice embryogenic trigger redirected for asexual propagation through seeds. Clonal propagation of hybrids. What could possibly go wrong?
Brainfood: Conservation indicator, Asian diversity, Sorghum QTLs, Wheat & barley evolution, Nematode detection, Gut microbiome, IBPGR base collection, Speed breeding, Pigeonpeas double, Dingo genetics, Wild tea, Yam anthracnose, Global land use change, Tree breeding double
- Comprehensiveness of conservation of useful wild plants: An operational indicator for biodiversity and sustainable development targets. Lots to do. Lots.
- The East Asiatic region of crop plant diversity. Southwest China especially rich, with its 44 species of kiwifruit, for example.
- The Sorghum QTL Atlas: a powerful tool for trait dissection, comparative genomics and crop improvement. Maybe this will get the stuff used a bit more.
- Domestication and crop evolution of wheat and barley: Genes, genomics, and future directions. Much progress recently, but high-resolution identification of crop-wild introgressions remains a gap.
- Real-time PCR, a great tool for fast identification, sensitive detection and quantification of important plant-parasitic nematodes. Results in 3 hours.
- Gut microbiome transition across a lifestyle gradient in Himalaya. Composition (but not diversity) can change in a generation when foragers transition to agriculture.
- Are the old International Board for Plant Genetic Resources (IBPGR) base collections available through the Plant Treaty’s multilateral system of access and benefit sharing? A review. Well, about 80% of them may be.
- Speed breeding in growth chambers and glasshouses for crop breeding and model plant research. Hacking the breeders’ equation: one giant leap…
- The drivers and methodologies for exploiting wild Cajanus genome in pigeonpea breeding. Sources of high protein, CMS, self-pollination, and resistances to various biotic stresses; but may need to rethink the secondary genepool.
- Development and Application of High-Density Axiom Cajanus SNP Array with 56K SNPs to Understand the Genome Architecture of Released Cultivars and Founder Genotypes. Top 6 founders accounted for 50% of the genetic base of released cultivars. Could use more of the above, in other words.
- Genomic analysis of dingoes identifies genomic regions under reversible selection during domestication and feralization. They’re reverting to wolves, genetically speaking.
- Hongyacha, a Naturally Caffeine-Free Tea Plant from Fujian, China. Well, wild tea relative anyway.
- An EST-SSR based genetic linkage map and identification of QTLs for anthracnose disease resistance in water yam (Dioscorea alata L.). One QTL looks promising.
- Global assessment and mapping of changes in mesoscale landscapes: 1992–2015. Main changes were forest→agriculture, followed by agriculture→forest.
- Quantitative Genetics and Genomics Converge to Accelerate Forest Tree Breeding. Great potential, on the brink, just around the corner…
- Genome Editing in Trees: From Multiple Repair Pathways to Long-Term Stability. Great potential, on the brink, just around the corner…
Brainfood: Medicago sequencing, Barley GBS, Cowpea GBS, Yeast origins, Czech WTP, Seed storage, Functional phenomics, BXW control, Adoption, Dietary diversity, Modern wheat drawbacks, Maize & CC, Lekker lettuce, Wild Ipomoea sequenced, Asia crop history, Sustainable intensification
- Whole-genome landscape of Medicago truncatula symbiotic genes. There’s always something else.
- Genebank genomics highlights the diversity of a global barley collection. IPK’s, that is, and that’s 22,000 strong. Let the GWAS begin. Including for whisky-related traits, of course.
- A polyploid admixed origin of beer yeasts derived from European and Asian wine populations. And beer-related.
- Genetic diversity and population structure of a mini-core subset from the world cowpea (Vigna unguiculata (L.) Walp.) germplasm collection. There are three broadly geographic clusters, and the mini-core is representative of overall diversity, in Africa at least.
- Identification of candidate domestication‐related genes with a systematic survey of loss‐of‐function mutations. Fancy methods lead to doubling of possible domestication genes in soybean to 110.
- Social Valuation of Genebank Activities: Assessing Public Demand for Genetic Resource Conservation in the Czech Republic. Willingness to pay is $9 per sample. But this is unpacked in a guest post by Nik.
- Gene bank scheduling of seed regeneration: Interim report on a long term storage study. Maybe someone can tell me what’s new here?
- Functional phenomics: An emerging field integrating high-throughput phenotyping, physiology, and bioinformatics. Again, what exactly is new here, apart from the word pheme?
- Xanthomonas Wilt of Banana (BXW) in Central Africa: Opportunities, challenges, and pathways for citizen science and ICT-based control and prevention strategies. Technology is not enough.
- Beyond individuals: Toward a “distributed” approach to farmer decision‐making behavior. And even if it were enough, adoption is a whole ‘nother thing…
- Dietary Diversity: Implications for Obesity Prevention in Adult Populations: A Science Advisory From the American Heart Association. As currently defined, dietary diversity does not necessarily mean healthy eating.
- Modern Wheat Varieties as a Driver of the Degradation of Spanish Rainfed Mediterranean Agroecosystems throughout the 20th Century. Under traditional organic management, older varieties have similar yields to modern varieties, plus more biomass both above and below ground, making for better soils.
- Peculiarly pleasant weather for US maize. Adaptation to warmer climates accounts for 28% of yield increases since 1981. It won’t last, see below.
- Increase in crop losses to insect pests in a warming climate. Losses to insects will increase by 10 to 25% per degree Celsius of warming for wheat, rice, and maize.
- Metabolite variation in the lettuce gene pool: towards healthier crop varieties and food. Tasty lettuce is possible.
- Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement. Carotenoid biosynthesis alleles identified.
- Climate change stimulated agricultural innovation and exchange across Asia. Climate models suggest that about 3,500 years ago Central Asia and Tibet cooled, and 2,000 years ago China followed suit, in both cases leading to shifts in crops.
- Intensification for redesigned and sustainable agricultural systems. Depends on building social capital first.
Nibbles: Land use change, Herbarium data, Crop substitution, Agroforestry in PNG, Eat This Pickle
- That global land use change map put to good polemical use.
- Herbaria put to use.
- Let them grow coca.
- Well, it is sort of agroforestry, right?
- Jeremy gets into a slight pickle.
Brainfood: Conserving rice, Cypriot olives, Bambara groundnut bioactives, Chinese spuds, Ancient pastoralism, Epigenetics, Diverse rice systems, Detecting evolution, CWR & pollution, VAM, Bacterial taxonomy
- Securing Diversity for Food Security: The Case of Conservation and Use of Rice Genetic Resources. Great achievements, but “… 95% of the rice genepool remains untapped and unexploited in rice improvement.”
- Characterization and Identification of Indigenous Olive Germplasm from Cyprus Using Morphological and Simple Sequence Repeat Markers. 125 trees, 32 accessions, 16 genotypes, 3 groups.
- Quantification of Selected Anti-nutrients and Bioactive Compounds in African Bambara Groundnut (Vigna subterranea (L.) Verdc.). Nothing to worry about, but if you insist on worrying, try the cream-coloured ones.
- DNA Fingerprinting and Genetic Diversity Analysis with Simple Sequence Repeat Markers of 217 Potato Cultivars (Solanum tuberosum L.) in China. Cultivars released since 1950 have a narrow genetic base.
- Pastoralism may have delayed the end of the green Sahara. What have pastoralists ever done for us?
- Epigenetic Diversity and Application to Breeding. Some epigenetic differences can be inherited independently of genetic differences. But how to use it?
- Complex rice systems to improve rice yield and yield stability in the face of variable weather conditions. The more azolla, fish and ducks the better.
- Can plants evolve to meet a changing climate? Yes, and we can detect it: the potential of field experimental evolution studies.
- Wheat’s wild relatives vary in their response to nitrogen and ozone. In situ populations may be at risk.
- Little evidence that farmers should consider abundance or diversity of arbuscular mycorrhizal fungi when managing crops. One less thing to worry about? Ok, one fewer thing to worry about.
- Exclusivity offers a sound yet practical species criterion for bacteria despite abundant gene flow. Taxa do exist if you take the whole genome into account.