- On the post-glacial spread of human commensal Arabidopsis thaliana. A bit like Neanderthals.
- Exploration of the genetic diversity of cultivated potato and its wild progenitors (Solanum sect. Petota) with insights into potato domestication and genome evolution. Elite cultivars are a pretty diverse lot.
- Fundamental species traits explain provisioning services of tropical American palms. Bigger, more widespread species are more important to local people. Which means some useful things may be being missed.
- Genotyping-by-sequencing provides the first well-resolved phylogeny for coffee (Coffea) and insights into the evolution of caffeine content in its species: GBS coffee phylogeny and the evolution of caffeine content. Origin of the genus could be Africa. Or Asia. Or the Arabian Peninsula. So that narrows it down.
- A quiet harvest: linkage between ritual, seed selection and the historical use of the finger-bladed knife as a traditional plant breeding tool in Ifugao, Philippines. People kept old harvesting technology because it helped them show due reverence to the rice plant, and select seeds.
- Old Crop, New Society: Persistence and Change of Tartary Buckwheat Farming in Yunnan, China. It’s going down, but won’t disappear. No word on what’s happening to diversity though.
- Tapping the genetic diversity of landraces in allogamous crops with doubled haploid lines: a case study from European flint maize. The things people have to do to make use of landraces.
- Conservation of indigenous cattle genetic resources in Southern Africa’s smallholder areas: turning threats into opportunities — A review. We now the breeds, but not all their characteristics, and how to get the most out of them.
- The Importance of Endophenotypes to Evaluate the Relationship between Genotype and External Phenotype. Oh for pity’s sake, something else to worry about.
Nibbles: Meet a breeder, Radiation breeding, Cassava IK, Banana apocalypse, Chestnut doom & gloom, Crazy grafter, Crazy recombination, Obsidian sickle, Cat rug
- Meet a pumpkin breeder.
- Meet the history of atomic plant breeding.
- Meet a cassava anthropologist.
- Dial back the banana apocalypse stuff, banana guy says.
- On the other hand, the American chestnut apocalypse is all too real.
- A really wild pig.
- Grafting gone wild.
- Wild plants reveal a gene to speed plant breeding, someday.
- Beautiful Neolithic tools from the Sea of Galilee.
- And a beautiful, but slightly freaky, Egyptian rug. Made of cat hair.
Nibbles: Wheat rust, Coconut history, Svalbard, Cahokia, Millets, Politics, Crones & robots, Citrus history, Argan development
- Rust continues to never sleep.
- The discussion of whether there were coconuts on the Pacific coast of Panama prior to the Conquista continues on the Coconut Google Group.
- ICARDA and CIMMYT continue to love the Svalbard Global Seed Vault.
- Climate change continues to be implicated in past societal collapses.
- NPR continues to plug those millets.
- Cautionary tale of Vavilov and Lysenko continues to be told, thankfully.
- The rise and rise of the drone continues. See what I did there?
- The relentless popular culture journey of citrus continues.
- And that of argan begins.
Mapping pests the old fashioned way
The collaborative project “Predicting climate change-induced vulnerability of African agricultural systems to major insect pests through advanced insect phenology modeling and decision aid development for adaptation planning” was led by CIP and implemented in collaboration with the International Centre of Insect Physiology and Ecology (icipe) and the International Institute for Tropical Agriculture (IITA). In the project, pest risk assessments under potential future climates were conducted for a number of important insect pests of agricultural and horticultural crops in Africa (i.e., potato, sweetpotato, vegetables, maize, cassava, and fruit). Results of these assessments are presented in the Pest Distribution and Risk Atlas for Africa (Pest Risk Atlas for Africa, for short).
And here it is, covering 3 potato pests, 5 for sweetpotato, 4 for vegetables and 5 for maize. For each pest, there’s a lot of information on detection and identification, biology, impact, and control, as well as a detailed geographic analysis of distribution and severity, now and in the future, at various scales.
Check out, for example, what’s going to happen to sweetpotato whitefly (Bemisia tabaci) in Africa (there are also global and country maps, in this case).
This shows the absolute change in potential population growth between 2000 and 2050. Note the bad news for Central Kenya, which will be interest the mother-in-law, who rents out some bottomland for sweetpotato. And she’ll have plenty of Chinese company, by the looks of the global maps.
At least, I guess so. It’s difficult to be sure when all you have are maps in the form of images. I do hope they’ll be available on Google Earth in due course, for researchers (and indeed farmers) who want to drill down a bit.
Brainfood: Cotton domestication, Niche modelling, Finger millet double, Bird flu, Lake Chad millet, USDA Ethiopian sorghum, Phast phenotyping, Corchorus genomes
- Genome-wide divergence, haplotype distribution and population demographic histories for Gossypium hirsutum and Gossypium barbadense as revealed by genome-anchored SNPs. Parallel domestication.
- Integrating species distribution modelling into decision-making to inform conservation actions. You need really nice maps.
- Establishing a core collection of finger millet (Eleusine coracana [L.] Gaertn.) ex situ holdings of the Ethiopian genebank. Particularly interesting for the discussion of what to do with the core, now that it exists.
- Characterization of Some Ex Situ Conserved Finger Millet (Eleusine coracana (L.[/efn_note] Germplasm Accessions in Sri Lanka. Unlike this one.
- Global mapping of highly pathogenic avian influenza H5N1 and H5Nx clade 2.3.4.4 viruses with spatial cross-validation. It’s the intensively raised chickens.
- Unexpected pattern of pearl millet genetic diversity among ethno-linguistic groups in the Lake Chad Basin. Different linguistic groups have genetically distinct pearl millet, but only on the western side of the lake.
- Genomic characterization of a core set of the USDA-NPGS Ethiopian sorghum germplasm collection: implications for germplasm conservation, evaluation, and utilization in crop improvement. 7,217 accessions from Ethiopia, 374 in the core subset, representing 11 highly admixed and very diverse populations.
- High-throughput phenotyping and QTL mapping reveals the genetic architecture of maize plant growth. Brave new world.
- Comparative genomics of two jute species and insight into fibre biogenesis. There are a few but interesting genetic differences between the 2 species of Corchorus cultivated for fibre. No word on the differences between fibre and vegetable varieties, if any.