- Resistance and Tolerance to Root Herbivory in Maize Were Mediated by Domestication, Spread, and Breeding. Domestication and spread decreased maize resistance to Western corn rootworm, but breeding increased it.
- Does genetic diversity protect host populations from parasites? A meta‐analysis across natural and agricultural systems. Yes, but it depends. Western corn rootworm unavailable for comment.
- Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding. Lots of variants in regulatory genes for agronomic traits, compared to domesticated lines.
- Genomic evidence for recurrent genetic admixture during the domestication of Mediterranean olive trees (Olea europaea L.). There was a domestication bottleneck back in the day, but that was almost wiped out by later repeated introgression from the wild relative as the crop spread. So quite different from the above maize and tomato cases?
- Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding. Not just good for QTL mapping any more, but you need a whole package of stuff for them to be useful to breeding programmes.
- Current uses of Andean Roots and Tuber Crops in South American gourmet restaurants. None of the chefs interviewed knew of mauka, but it’s not their fault.
- Payments for agrobiodiversity conservation services: An overview of Latin American experiences, lessons learned and upscaling challenges. Conserving in situ 100 varieties on 5 hectares each would cost US$70,000 p.a. Maybe useful for mauka? But will chefs pay?
- Genetic and agro-morphological diversity in global barley (Hordeum vulgare L.) collection at ICARDA. Under heat stress, though, which is the important bit left out of the title. Unclear if any of the material was from the Canaries (see below), but I can find out if anyone’s interested. Come to think of it, I’m kinda interested myself…
- An Evolutionary Approach to the History of Barley (Hordeum vulgare) Cultivation in the Canary Islands. You can apparently infer historical extents of cultivation on different islands in the archipelago, as well as the timing of separation of populations, which is pretty amazing. No word on representation in rock art though (see below).
- Enset (Ensete ventricosum) and the Archaeology of Southwestern Ethiopia. Information comes mainly from megalithic and rock art sites, which is pretty amazing. No word on genetic relationships, at least in this paper. Do you need me to link to previous Brainfoods on enset? No, of course you don’t, you know how to search the archive. You just put your lips together, and
whistleblow (kudos to whoever quotes the reference in the comments first). - Relict Plant Communities at Prehispanic Sites in Oaxaca, Mexico: Historical Implications. Ancient native Mexicans really liked succulents around their settlements. Well, who wouldn’t, when all is said and done?
- To clean or not to clean: Cleaning open‐source data improves extinction risk assessments for threatened plant species. Clean. Always clean. And then clean again.
- Global Patterns and Drivers of Bee Distribution. Hope they cleaned the data or this unusual double-humped diversity pattern could be in trouble, and that would be a pity.
Brainfood: Extension, Wheat adoption, Bean ideotypes, Chilli evaluation, Rice domestication, Mungbeans from space, Biodiversity accounting, Cassava futures, Maize haplotypes, Heterosis, Cryo
- Does it matter who advises farmers? Pest management choices with public and private extension. Yes, at least in Switzerland. Public = prevention, private = cure. Well colour me surprised.
- Ethiopia’s transforming wheat landscape: tracking variety use through DNA fingerprinting. Only 28% of farmers correctly named their wheat varieties, many of which were from CGIAR breeding programmes.
- Analysis of the Similarity between in Silico Ideotypes and Phenotypic Profiles to Support Cultivar Recommendation—A Case Study on Phaseolus vulgaris L. Italian farmers not great at keeping track of new varieties either, but who needs names when you have fancy maths?
- Morphological, Sensorial and Chemical Characterization of Chilli Peppers (Capsicum spp.) from the CATIE Genebank. From 192 accessions to this little beauty from Panama.
- Two divergent chloroplast genome sequence clades captured in the domesticated rice gene pool may have significance for rice production. Rice is from Mars, rice is from two Venuses.
- Identification of Mung Bean in a Smallholder Farming Setting of Coastal South Asia Using Manned Aircraft Photography and Sentinel-2 Images. From 10-m imagery for pity’s sake! Amazing stuff. Soon we’ll be able to distinguish landraces from modern varieties, right? Right?
- Linking biodiversity into national economic accounting. Yikes, biodiversity makes no contribution to agricultural development at all?
- High sink strength prevents photosynthetic down-regulation in cassava grown at elevated CO2 concentration. Could result in higher yields, but effect will vary among varieties.
- Discovery of beneficial haplotypes for complex traits in maize landraces. Landrace diversity for early plant development, robustness and growth form that could be useful in Europe made accessible.
- Understanding the classics: the unifying concepts of transgressive segregation, inbreeding depression and heterosis and their central relevance for crop breeding. It’s the dispersion of favorable alleles between parents.
- Challenges and Prospects for the Conservation of Crop Genetic Resources in Field Genebanks, in In Vitro Collections and/or in Liquid Nitrogen. Everything that can be in cryo should be in cryo, and some things that currently can’t too.
Nibbles: Seedscapes, Bee map, Sacred bananas, Sustainable eating, Hazelnuts, Investing
Brainfood: Genebank technology, Genebank research, Apple genomes, Napier genome, Wheat genome, Blue maize, FACE, Pigeonpea diversity, Millet domestication, Ancient dogs, Ancient bovids, Domestication syndrome, Date pollen, Commons, Genetic diversity trifecta
- New technologies to improve the ex situ conservation of plant genetic resources. Genebanks need to catch up with the latest science even just to maintain their seeds.
- Advanced Strategic Research to Promote the Use of Rice Genetic Resources. High-throughput phenotyping and genome sequencing are the latest science that will make the most of those seeds.
- Phased diploid genome assemblies and pan-genomes provide insights into the genetic history of apple domestication. Analysis of genomes of two main wild progenitors plus the crop uncovers genes so far untapped for improvement.
- The elephant grass (Cenchrus purpureus) genome provides insights into anthocyanidin accumulation and fast growth. It’s related to pearl millet, apparently. Which may or may not be a good thing. No word on any genes so far untapped for improvement.
- Triticum population sequencing provides insights into wheat adaptation. Wide adaptation is largely due to introgression from the wild. No word on any genes so far untapped for improvement.
- The Right Tortilla for the Right Occasion: Variation in Consumers’ Willingness to Pay for Blue Maize Tortillas Based on Utilization. Consumers are willing to pay 42% more for blue tortillas, but only when eating out, presumably as part of virtue signalling.
- 30 years of free‐air carbon dioxide enrichment (FACE): What have we learned about future crop productivity and its potential for adaptation? That enrichment wont save us, that’s what.
- Phenotypic Divergence Analysis in Pigeonpea [Cajanus cajan (L.) Millspaugh] Germplasm Accessions. From 81 accessions to 9 promising ones, at least for Malawi.
- A model for the domestication of Panicum miliaceum (common, proso or broomcorn millet) in China. Domestication took 3000 years.
- Origins and genetic legacy of prehistoric dogs. All dogs are descendants of a now extinct wolf population, and their genetics show both interesting parallels with, and divergences from, that of humans.
- Brain Size Does Not Rescue Domestication Syndrome. Not even for humans, I suspect. Kidding apart, this is fascinating. It suggests that, for animals at least, the domestication syndrome is not actually a thing. Or at least has not been properly tested. If there’s interest, I’ll do a full post. Let me know in the comments below.
- Ancient genomes reveal tropical bovid species in the Tibetan Plateau contributed to the prevalence of hunting game until the late Neolithic. The now tropical gaur ranged much further north during the warmer Neolithic, which facilitated the exploration of the Tibetan Plateau.
- Optimization of in vitro germination and cryopreservation conditions for preserving date palm pollen in the USDA National Plant Germplasm System. Always good to have another way of storing germplasm.
- Beyond the material: knowledge aspects in seed commoning. Comparing global with local seed commons reveals importance of managing knowledge, both scientific and traditional.
- Genetics to the rescue: managing forests sustainably in a changing world. To manage forests sustainably, you have to conserve and use their genetic diversity. Interesting that they needed a conference to work that out.
- Genetic mixing for population management: from genetic rescue to provenancing. And using that genetic diversity could mean mixing it up.
- The importance of genomic variation for biodiversity, ecosystems and people. Maintaining ecosystem services means maintaining genetic diversity. Sounds like these authors went to the same conference.
Genebanks and Food Security in a Changing Agriculture
This special issue results from a renewed call to demonstrate the value-in-use of conserving and supplying plant genetic resources conserved in genebanks to researchers, plant breeders, and farmers. We present these studies as a collective contribution to a relatively small body of literature that highlights not only the importance of crop plant diversity managed by genebanks but also the diversity of genebank functions and uses.
The special issue is of Food Security.
Here’s the running order:
- Valuing genebanks — Melinda Smale, Nelissa Jamora
- Conserving genetic resources for agriculture: economic implications of emerging science — Douglas Gollin
- The contribution of the International Rice Genebank to varietal improvement and crop productivity in Eastern India — Donald Villanueva, Melinda Smale, Nelissa Jamora, Grace Lee Capilit
- Dynamic conservation of genetic resources: Rematriation of the maize landrace Jala — Vanessa Ocampo-Giraldo, Carolina Camacho-Villa, Denise E. Costich
- Andean potato diversity conserved in the International Potato Center genebank helps develop agriculture in Uganda: the example of the variety ‘Victoria’ — Vivian Bernal-Galeano, George Norton, David Ellis, Noelle L. Anglin
- The contribution of the CIAT genebank to the development of iron-biofortified bean varieties and well-being of farm households in Rwanda — Stefania Sellitti, Kate Vaiknoras, Melinda Smale, Nelissa Jamora
- Use and benefits of tree germplasm from the World Agroforestry genebank for smallholder farmers in Kenya — Kavengi Kitonga, Nelissa Jamora, Melinda Smale, Alice Muchugi
- The tale of taro leaf blight: a global effort to safeguard the genetic diversity of taro in the Pacific — Sefra Alexandra, Nelissa Jamora, Melinda Smale, Michel E. Ghanem
- Transferring diversity of goat grass to farmers’ fields through the development of synthetic hexaploid wheat — Hafid Aberkane, Thomas Payne, Masahiro Kishi, Melinda Smale, Ahmed Amri
- ‘Warehouse’ or research centre? Analyzing public preferences for conservation, pre-breeding and characterization activities at the Czech genebank — Nicholas Tyack, Milan Ščasný
Kudos to my colleague Nelissa Jamora for making it happen.