Brainfood: Benin diversity, Catalan diversity, Serbian sorghum, Flowering in barley and sunflower, Potato nutritional quality, Cacao genebank management, Potato genebank management, Caribbean cattle, Venezuelan CWR, Ecogeographic surveys, Refugia, Vegetation change, Fisheries, Botanic gardens, Crop diversity patterns, Old trees

Roads not taken

Glasshouse at Chelsea Physic Garden
The BBC has a history of botany, but it’s not available in my area, despite the fact, pointed out by my friend Michael, that the Beeb’s motto is “Nation shall speak peace onto nation.” And the Save Our Species coalition puts out a call for proposals for Threatened Species Grants and Rapid Action Grants. But plants, let alone crop wild relatives, are not eligible (at least for now). Don’t you wish sometimes that you’d just stayed in bed?

Picking a good agrobiodiversity beach

My apologies to Robert Hijmans, the developer of DIVA-GIS. I had forgotten how awsomely awesome his software. It was really only the work of half an hour to export a shapefile of the distribution of wild and weedy accessions from Genesys, open it in DIVA-GIS, produce a gridfile of taxon richness, export it as a KMZ, and open it in Google Earth, together with The Guardian’s European bathing places dataset, which I had prepared earlier.

A beach called La Figueirette at Theoule-sur-Mer is right in the middle of that (relative) hotspot of species richness not far from the Italian border shown in light orange on the map above. And the beach doesn’t look too bad either, at least on StreetView.

Now, to check out the lakes…

Rice domestication roundup

In the past few weeks there’s been a number of papers on the genetics of rice domestication. I’ll just give you the main findings here, and leave you to battle with the details on your own. With the help of various other bloggers.

Dorian Fuller did a great job of summarizing the multiple domestication (or indica and japonica) theory at The Archaeobotanist a couple of weeks back. This seems to have the upper hand at the moment. Wild perennial rice is cultivated in wetland margins in the Neolithic Yangtze, and as the water ecology begins to be altered by humans, creating seasonal drought conditions to stimulate seed production, particular adaptations are selected (annuality, short stature, less branching etc.), which leads to the domestication of japonica rice. This is then taken to the area of an independently-domesticated proto-indica, probably around 3800-4000 years ago, and some genes are exchanged. So far, so good, and there is now a pretty comprehensive database of rice archaeology to back up the recent studies of single and multiple genes.

Well, certainly the “genetic and selective basis for domestication” seem to be different for japonica and indica, but another recent paper throws some doubt on the multiple domestication idea. Now, I’ve briefly discussed this with people who know a lot more about rice than I do and it seems the main sticking (as it were) point is the dating of the indica-japonica split to 3,900 years ago. Previous estimate were in the hundreds of thousands of years, supporting the multiple domestication theory, but the problem is that the newer, lower estimate was based on domestication genes only. Lots more argument on the horizon, I suspect.

Nibbles: Median strips, Vitamin A, Mapping in Kenya, Chaffey, Small farms, Rennell Island coconuts, Sweet potato breeding, Acacia nomenclature, Crop models, Pulque, Fruits