- Graph-based pan-genome reveals structural variations associated with agronomic traits in mung bean. Pan-genome captures extensive structural variation missed by a single reference genome, providing new targets for mung bean improvement.
- Wild genes to the rescue: high-throughput genomics reveals the wild source of broomrape resistance in sunflower. Combining high-throughput root phenotyping with genomics identifies wild introgressions underlying broomrape resistance in sunflower and exposes valuable adaptive variation for breeding.
- Genomic insights into the local adaptation of spontaneous olive trees in the Mediterranean Basin highlight the need for conservation planning in the face of global change. Genomics of wild West Mediterranean olive trees reveals patterns of local adaptation across temperature and rainfall gradients that it will be important to conserve as climates change.
- Genetic regulation of major immunogenic protein accumulation in peanut seeds. Genomics provides targets for breeding peanuts with reduced allergenicity.
- Genomic elucidation of hybridization between Liberica and excelsa coffee and its implications for coffee crop development. Genomics confirms that Liberica and excelsa coffee readily hybridize and produce fertile, genetically diverse offspring with intermediate agronomic traits, a possible source of diversity to broaden coffee’s climate resilience.
- Simple sequence repeat (SSR) marker-based genetic diversity and population structure of large-leaf tea germplasm across four major tea-producing regions of Yunnan, China. Genomics of Yunnan’s large-leaf tea germplasm finds substantial genetic diversity but remarkably little regional differentiation, showing that seed propagation, natural crossing and human movement have maintained genetic connectivity across tea-growing regions.
- Measuring maternal line selection driven by differential survival in ex situ collections for plant conservation. A new method distinguishes random mortality from selection among maternal lines in ex situ collections, offering conservationists a way to detect whether plant deaths are systematically eroding the genetic variation they are trying to preserve. And no genomics involved.
The fruits of migration
As chance would have it, following my recent speculative foray into the possible connection between language and crop diversity, an essay by the great Andrea Wulf 1 has just appeared that tells the story of how a remarkable German naturalist used breadfruit and linguistics to work out Polynesian migration patterns long before DNA or archaeology could confirm them.
George Forster sailed with his father aboard the HMS Resolution on Cook’s second voyage (1772-1775) and encountered breadfruit across the South Pacific. He noticed that the trees were seedless and could only be propagated by root cuttings. And also that there didn’t seem to be wild breadfruit trees anywhere in the islands. That meant every tree he saw, and there were many of them, had been deliberately planted by people.
Digging through the university library back in Göttingen, Forster later found that wild, seeded breadfruit with little flesh do exist, but in Southeast Asia. If the Pacific islands only had the improved, seedless types, he reasoned, they must have been carried there by people. That was proof both of sophisticated Polynesian plant management and of a migration route running from Southeast Asia eastward across the Pacific.
Forster combined this with careful attention to language. He deduced that most Pacific languages he encountered were dialects of a single root language, with small, systematic sound shifts. He and his father also charted how the presence of Malay loanwords decreased the farther east an island was located, which suggested that islands closer to Southeast Asia — the home of Malay — were settled earlier.
Where his fellow naturalist Joseph Banks saw the breadfruit purely as an economic resource (later lobbying to transplant it to the West Indies to feed enslaved plantation workers, hence HMS Bounty and all that), Forster saw it as historical and ethnographic evidence. That’s a strikingly different, more humanistic and — to me at least — more appealing way of reading a plant.
Wulf then jumps forward to modern archaeology and genetics, which broadly confirm Forster’s reconstruction. There was an initial human population in the region of Papua New Guinea dating back 45,000 years. This was followed by a second, Austronesian-speaking wave migrating out of Taiwan and thereabouts around 3,500 years ago. They travelled by the stars in “outrigger or double-hulled canoes loaded with hogs, chickens, root vegetables, coconuts, bananas, and breadfruit seedlings.” And they mixed with the descendants of the earlier wave through Melanesia. Their own descendants eventually reached Fiji, Samoa, Tonga, and, much later, Tahiti, Hawaii, Easter Island and New Zealand.
The essay closes by tying this to Tongan historian Epeli Hau’ofa’s idea of “Oceania” — the Pacific not as scattered, isolated islands, lost in a vast ocean, but as one interconnected “sea of islands.” Exactly what Forster intuited two centuries before it became conventional wisdom.
We’ve blogged a lot about breadfruit over the years. Check out the archive. And in particular listen to the recently-retired Dr Diane Ragone describe her 40-year journey to understand this remarkable tree.
Nibbles: Cambridge genebank job, Grapevine roundup, PlantSearch-Accessions, India agrobiodiversity roadmap
- Cambridge University Botanic Garden is looking for a Seed Bank Coordinator, with applications closing on 16 August.
- Our friend Colin Khoury at the New York Botanical Garden explores the remarkable diversity, evolution and cultural significance of grapevines, highlighting why these climbing plants deserve more attention.
- BGCI releases a major update to PlantSearch, expanding access to accession-level data from botanic garden collections worldwide.
- India’s National Advisory Board on Management of Genetic Resources outlines a roadmap to strengthen the conservation and sustainable use of the country’s agrobiodiversity. Hopefully botanical gardens are included.
Nibbles: Apple-banana paradox, Genebanks, Indian wheat, Indian wild rice, Kenya community seed banks, Wild coffee, Macadamia history, Taro research, Cacti
- Why the modern food system prizes uniformity even though resilience depends on diversity. Spoiler alert: follow the money.
- Historic crop varieties are finding renewed relevance as farmers contend with more volatile weather, emerging pests and changing markets. Let’s hope there’s money to conserve them.
- India’s traditional wheat varieties contain diversity that could help breeders develop crops better able to withstand heat and drought. Let’s hope there’s money to conserve them.
- India announces significant progress in conserving its wild rice genetic resources. Great that there was money to conserve them.
- Community seed banks across Kenya are calling for formal recognition and sustained support, arguing that locally managed collections strengthen seed sovereignty, preserve traditional varieties and help farming communities adapt to climate change. Yes, but are they enough without national genebanks?
- Researchers are racing to conserve wild coffee species whose genetic diversity may provide the resistance and resilience needed to secure tomorrow’s morning cup. Is the industry contributing, though ?
- New history of the macadamia traces its remarkable journey from Australia’s native forests to a global crop, while underscoring why conserving the remaining wild populations is essential for the crop’s long-term future.
- Researchers at the University of the South Pacific investigate how taro can withstand climate change, combining research with conservation to help protect one of the region’s most culturally and nutritionally important staple crops.
- Chester Zoo collects seeds from highly threatened cacti, because why not?
Brainfood: Wild chickpea, Feral brassica, Peruvian cacao, Panamanian cacao, Tree diversity, Healthy diets in PNG
- Genome-wide molecular diversity analyses identify wild Cicer as reservoirs of variations for chickpea improvement. Wild relatives of chickpea harbour a wealth of genetic variation that has yet to be exploited by breeders. But it’s mainly within species.
- Genetic and Morphological Diversity in Spontaneous Populations of Brassica rapa: How Do Feral Populations Differ From Wild Ones? When a crop escapes cultivation, does it become wild again? Apparently not. Pity.
- Genetic structure of traditional cacao reveals four new genetic lineages in indigenous Amazonian sites in Peru. Genetic analysis of traditional cacao maintained by Indigenous communities in the Peruvian Amazon uncovers four previously undescribed genetic lineages.
- Contrasting germplasm composition and propagation practices in the two major cacao-growing areas in Panama. Two of Panama’s principal cacao-growing regions have developed markedly different genetic profiles, reflecting both the varieties farmers cultivate and how they propagate them. I think they have been previously described though.
- Ecological multifunctionality of watersheds increases with tree species richness. Watersheds planted with a greater diversity of tree species perform better across multiple ecological functions simultaneously, including nutrient cycling, soil protection and water regulation.
- Nutrition sensitive poverty and its correlates in Papua New Guinea: incorporating healthy diet targets into poverty measurement. Conventional poverty measures ask whether people can afford basic necessities. Why not ask a more demanding question: can they afford a healthy diet? Hopefully meaning a diverse one.