The how and why of indicators of agricultural biodiversity

ResearchBlogging.orgLet us assume, for the sake of argument, that one crop variety does disappear every single day. The question still remains: does it matter? After all, the variety that was just lost yesterday might be very similar to one that’s still out there today. That’s part of the reason why a group of French researchers has just come up with “A new integrative indicator to assess crop genetic diversity,” which is the title of their paper in Ecological Indicators. 1

Christophe Bonneuil and his co-workers thought that, given the data, they could come up with something more powerful and more widely applicable than richness (i.e. the number of different varieties) or the standard diversity indicators (i.e. various combinations of richness and evenness). So they started with number of varieties, but then they factored in the relative extent to which each was grown in their study area, the departement of Eure-et-Loire in France (which is the evenness bit), how genetically distinct each was (which is the bit which addresses the pesky question of how different the variety that disapeared today is from all the other ones left behind), and how much genetic diversity there was inside each.

They got the data on genetic differences among varieties by comparing genebank samples of all the wheat types grown in Eure-et-Loire from 1878 and 2006 at 35 microsatellite loci, and data on acreage of each variety at different points in time from various archival sources. Internal genetic diversity was set at one of three values derived from the literature, depending on whether the variety was a landrace, an old commercial line or a modern pure line.

They put all that together into this monster indicator of allelic diversity in the landscape,

and then calculated it for different times periods, and got this:

That shows a decrease in diversity as landraces are replaced with modern varieties, but, interestingly, something of a resurgence after the mid-1960s, as more diverse germplasm is introduced into breeding programmes. The indicator has been on a downward trend just lately, as the genetic relatedness of the most frequent varieties has increased. 2 Overall, it’s maybe a 50% drop since 1878. Not entirely dissimilar to the iconic 75% figure, and at least this wasn’t plucked out of thin air.

Interesting enough, but check out the trend in number of varieties over the same period:

Totally different. Pretty much an upward trend, albeit with some stuttering. Certainly no evidence from these data of massive erosion of diversity. Maybe the findings of Jarvis et al. (2008) that simple richness can be a useful indicator of diversity should be applied with caution if you’re not just dealing with landraces.

But how significant is it really that the value of this particular indicator of diversity, for all its fanciness, has decreased? Has anyone actually suffered as a result? I don’t know, but a second paper I came across this week suggests how one could find out. Roseline Remans and others associated with the Millennium Villages Project have a study out in PLoS ONE which adds yet another — different — nuance to diversity. 3 Their index considers not just how many different crops are grown on a farm, but also how different they are in their nutritional composition. Think of it as the nutritional analogue of the inter-varietal genetic diversity term in the French indicator. The more different in nutritional composition two crops are, the more complementary they are to local diets, the more important it is that both are there, the higher the resulting “functional” diversity index. And in fact the authors did find a positive relationship between their diversity indicator and nutritional status, at least at the village level.

Easy to imagine (though perhaps less easy to actually implement) a further refinement of Bonneuil et al.’s indicator which additionally integrates nutritional data, to yield an indicator of crop genetic and functional diversity. And, of course, once you have such a super-indicator, it might actually be possible to reward people on the basis of their success in maintaining it at high levels. Which, as it happens, is the subject of yet another paper I happened across last week. 4 But maybe that’s a paper too far for now. 5

Brainfood: Species prioritization, In situ costs, Mycorrhiza, Crop diversity indicator, Diet diversity indicator, Ag & Nutrition, Chestnut blight, Oyster translocation, Maize introgression, Italian asses, New hosts for pests

Is there more than one TME 419 cassava?

The TME 419 cassava that I Nibbled about earlier today has been making quite a splash in both DR Congo and Nigeria. Question is, is it TME 419?

Those who know about such things will recognize TME as an IITA genebank number. And indeed, if you look it up either on Genesys or IITA’s genebank database, you land on a Togolese landrace called Gbazekoute. Unfortunately, that doesn’t look anything like the TME 419 described in IITA’s Improved Cassava Variety Handbook. 6 There, TME 419 is indeed a Togolese landrace, but with the following characteristics: 7

Compare that with the description in the IITA database. Is the shape of the leaf’s central lobe lanceolate or elliptic? Is there or is there not pigmentation on the petiole? Is the colour of the root pulp white/cream or yellow? And does it have a purple cortex or not? A discrepancy in one of these descriptors I might have understood, but it is clear to me that we’re talking here about quite different cassavas.

So I ask IITA: which one is the real TME 419? I mean the one making news in DR Congo and Nigeria.

Genebank database hell goes mobile

With a mighty leap, the ICARDA genebank has just landed squarely in the 21st century. You can now download an app and search the international collection managed by the centre from your Android phone. iPhone version coming soon. If you test it out, leave your comments here and they will reach the relevant ICARDA geek.