As a victim, I am particularly happy to recognize World Malaria Day and hail the Cinchona tree, source of quinine. Artemisia is the new Chinchona, of course. I dread to think how many of the kids in this picture I took in the Solomons, where I picked up the disease, will get malaria, or have already had it. Thanks, Kew.
Evolution of a weedy rice
Need to get the whole paper, but this analysis of the relatedness of weedy red rice and cultivated rice in Arkansas suggests that the diversity of the wild, weedy typ is large because (?) it evolved “in a region devoid of other weedy and wild Oryza species.”
Summarizing livestock domestication
You want a rapid gallop through what we have learned about livestock domestication from molecular markers? Here it is, courtesy of Groeneveld et al. Deep breath…
For all domestic species, mtDNA data have allowed the elucidation of the relationships with wild ancestor species, and for most species it is also informative at the intercontinental level… Sheep, goats, and taurine cattle (Bos taurus) are presumed to have been domesticated in Southwestern Asia. The Indus valley has been proposed to be the site of domestication of indicine cattle and the river type of water buffalo, while the swamp type of water buffalo is thought to have originated in the Yangtze valley. The domestication of pigs is considered to have happened across Eurasia and Eastern Asia in at least seven separate events involving both European and Asian subspecies of boar. The Yak is presumed to be the result of a single domestication event in China/Tibet with at least three maternal lineages contributing to the ancestral yak gene pool. Domestic chickens are thought to be the result of multiple domestication events, predominantly of Red jungle fowl (Gallus gallus) in Southeastern Asia and possibly also involving Gallus sonneratii and maybe Gallus lafayettii. Horses were domesticated in a broad area across the Eurasian steppe, and in this species the husbandry style has left considerable signatures. It is presumed that mares were domesticated numerous times, but that only a few stallions contributed to the genetic make-up of the domestic horse. The last finding illustrates the use of Y-chromosomal haplotypes as a marker for mammalian patrilines. This is still limited by the identification of haplotypes, but probably has the same potential as in human population genetics.
Quite a tour de force, I think you’ll agree. Read the paper itself for trenchant summaries of the results of literally dozens of molecular studies on these species, describing the relationships among breeds and geographic patterns in diversity. But if you’re just interested in the general principles, here they are:
- There is evidence of multiple domestication events for most species.
- These often involved more than one ancestor species or subspecies and
- repeated introgression events of closely related ancestor species.
- Genetic variability declines with increasing distance from centres of domestication.
- All species show strong geographic structure in genetic diversity, except sheep.
- Most of the genetic diversity is present within a breed and not between breeds.
The most interesting thing to me is the geographic structure, and the one thing the paper doesn’t do in any great detail is compare and contrast the patterns found in the different species. I mean, are horse breeds from Iberia more distinct from other European horse breeds than its cattle breeds are from other European cattle breeds, say? And if so, why? The paper describes the patterns found in each species, but doesn’t set them side-by-side, as it were. Once someone does that, we can go on to compare them with what we know about crops…
Why the sorghum crop failed in Kongwa — it’s not what you think
The average agricultural research paper describes some kind of formal experiment, whether in the lab or the research station or even farmers’ fields, and that is as it should be. To know if something really works, you need to be able to keep everything else the same. But there are experiments going on all the time out there, in real life, if you but know how to look. There is surely room in the scientific literature for more of the kind of case study reported in a recent paper in Food Security entitled “The underlying cause of the 2009 sorghum failure in Kongwa district and its implications for Tanzania’s vulnerability to climate change.” 1
Through a series of in-depth household and farm surveys the authors seem to have been able to identify the reason why the sorghum crop failed in Kongwa in 2009, and use that information to make general recommendations about what should be done to prevent this happening again in the future, not just in that area but elsewhere in Tanzania.
So let’s set the scene. People in Kongwa are poor, most living on less than $1 a day. They are on the edge of subsistence. They used to grow mainly maize, increasing the area of sorghum when the early rains were poor. Since about 2003, however, sorghum has been the main crop. They grow a suite of local sorghum landraces called Lugugu: long-duration, good-tasting and hard-grained, which means they can be stored for a long time if need be. They also have access to three improved open-pollinated varieties from ICRISAT 2: shorter-duration, which means they can cope with drought, but softer and thus more susceptible to storage pests, and also prey to the parasitic herb Striga. But then there are two Striga-resistant varieties on the market, bred by World Food Prize winner Gebisa Ejeta and released in Tanzania in 2002. Often, the early varieties are grown as a cash crop, sold to buy maize, which is the preferred food still.
In 2009 the rains started badly, and farmers were encouraged by local politicians, in their inimitable way, to “plant drought-resistant crops.” Of course they did, as they would have done anyway, but crop production was nevertheless below requirement. Why?
In fact, it seems that overall the rains, although relatively poor, should have been more than enough for the short-duration varieties. Problem was, there was no seed of these varieties at the optimum time for planting them. And when it finally arrived, too late to take advantage of what early rain there was, it was infected with Covered Kernel Smut. There was no seed at all of the Striga-resistant varieties in the area.
This is not a new problem. Shortage of improved sorghum seed was identified as a constraint as far back as 1987. But none of the village-based seed production projects that have been carried out has had much of an impact, clearly. At least not after the donor funding ceased. And, unfortunately
…the Government of Tanzania has actively discouraged farmers from conserving local sorghum landraces and this has resulted in increasing dependence on so-called improved varieties and is a long term threat to household food security.
Actively discouraged from keeping their long-duration but storable varieties; actively encouraged to plant new varieties that are more drought-tolerant, sure, but can’t be stored, cost money that they don’t have and whose seed is not available anyhow, or at least not in time. Who’d be a Tanzanian farmer?
Now, it seems that “the short rainy season that characterised the 2008–09
cropping season may become the norm,” so some answers need to be found. Better water management is one. And improvement of local seed storage practices. Also,
…attention should be paid to conserving indigenous landraces and breeding improved short season varieties that can be stored for longer periods using traditional, on-farm practices, as this would reduce the need for expensive and unsustainable external seed multiplication systems.
And, I would add, perhaps look into the feasibility of push-pull control measures for Striga.
But mostly the study seems to me a damning indictment of the existing seed system, and of it’s seeming lack of integration with the breeding sector. What good is breeding those “improved short season varieties that can be stored for longer periods using traditional, on-farm practices” if they don’t get to the farmers in time? Indeed, why has storability not been a breeding objective? Well, perhaps it has, and weevil-resistant stuff is on the way. But will it ever get to the farmers?
Now, talk of an integrated germplasm pipeline — from genebank to breeder to farmer — is all the rage these days, and about time too. The case is only strengthened by studies such as this. You don’t always need a replicated trial to do useful science.
Livestock biodiversity and conservation gets a global view
Animal Genetics has a Special Issue on “A Global View of Livestock Biodiversity and Conservation,” coordinated by Paolo Ajmone-Marsan and Licia Colli. It includes a review of genetic diversity in farm animals, and an assessment of what climate change means for the characterization, breeding and conservation of livestock. It’s all because of a 3-year EU project called GLOBALDIV.
It is formed by a core group of partners who participated in past EU or continental scale projects on Farm Animal Genetic Resources characterization and conservation. It also involves a much larger number of experts that are actively contributing to the success of the initiative. The project aims at improving the conservation, characterisation, collection and utilisation of genetic resources in agriculture in EU and beyond, complementing and promoting work undertaken in the Member States at the Community level and facilitating co-ordination of international undertakings on genetic resources in agriculture.
As one of the more info-savvy CG Centres, ILRI will no doubt have comments and analysis online very soon.
I got the news via Twitter.
