- He turns around in wonder, and what do you think he sees? The Georgia militia eating goober peas! Listen in full.
- Military-style rabble occupy the farm.
- Not to be outdone, China is buying up American agriculture, in many ways.
- Which is fine, because Israel to help US improve African agriculture. Africa not available for comment.
- Don’t talk to me about subsidies. Bad calories cheaper than good nutrition. Doh!
- Talk to me about this very pretty article on Crop Wild Relatives and their Potential for Crop Improvement instead.
- West Africans understood how to do that. Blog about search for the origins of West African agriculture.
- Move aside quinoa and family farming; Estonia wants 2016 to be The Year of Rye.
Brainfood: Lupin restoration, Balkan wheat drought tolerance, Metabarcoding, Wild sheep genetics, Organic vegetables, Diversity protects, Sorghum geneflow, Wild sunflower genetics
- A Molecular and Fitness Evaluation of Commercially Available versus Locally Collected Blue Lupine Lupinus perennis L. Seeds for Use in Ecosystem Restoration Efforts. Commercial seed sources can be dodgy, and that’s a problem.
- Comparison of responses to drought stress of 100 wheat accessions and landraces to identify opportunities for improving wheat drought resistance. 20 Balkan landraces seemed to be more drought tolerant than 80 accessions sourced globally.
- Towards next-generation biodiversity assessment using DNA metabarcoding. You gotta be kidding me, metabarcoding? Will they be applying it to soils? Yep.
- Selection and microevolution of coat pattern are cryptic in a wild population of sheep. You need to look at the genes.
- Will they buy it? The potential for marketing organic vegetables in the food vending sector to strengthen vegetable safety: A choice experiment study in three West African cities. Not enough.
- Plant diversity improves protection against soil-borne pathogens by fostering antagonistic bacterial communities. Chalk another one up to diversity. Did they say soil?
- Local scale patterns of gene flow and genetic diversity in a crop–wild–weedy complex of sorghum (Sorghum bicolor (L.) Moench) under traditional agricultural field conditions in Kenya. Mostly crop-to-wild, which could be a problem if transgenics are ever grown. If.
- Adaptation with gene flow across the landscape in a dune sunflower… is leading to “ecological” speciation.
Pitfalls in modeling the effects of climate change on genetic diversity
Don’t you just hate it when a striking message from an elegant model is complicated by, well, facts? I may have Nibbled a press release on a recent modeling study from Wageningen University. The crux of the results was that as species migrate north due to climate change, they shed diversity from the central, most diverse part of their distribution, which is bad for their ability to adapt.
Plant and animal species can lose their ability to adapt as a result of climate change. This is shown by research performed by Marleen Cobben with which she hopes to obtain her doctorate at Wageningen University (part of Wageningen UR) on 17 April 2012. Cobben used computer calculations to illustrate how the genetic base of plants and animals is seriously deteriorating due to climate change. The smaller genetic base makes species more vulnerable to problems such as diseases. Moreover, the fragmentation of landscapes and the loss of wildlife areas is accelerating this decline.
This was interesting to me because we routinely, and perhaps somewhat blindingly, these days say that climate change will lead to shifts in the distributions of species. Crop wild relatives, say. Shift that will absolutely require germplasm collecting and ex situ conservation. Nothing else will do. Forget about in situ, ex situ it must be. That’s because, when added up, these shifts in the distributions of individual species will result in profound alterations in the geographic patterns of species diversity. Some hotspots will disappear, some diversity-poor areas will be enriched. Difficult to plan in situ conservation under these conditions. Ergo, need to collect. Also, the distributional shifts required for a species to track the climate will in most cases surely be faster than the rate of migration of the species, leading inexorably to its extinction. Need to collect, and quick. I mean, what can a poor species do under climate change besides move or perish? Need to collect, I tell you.
Well, adapt, of course, that’s what it can do. And collecting is not going to help with that. Need to do in situ, maybe assisted migration, you clod.
So a study which suggests that climate change is likely to also result in a decrease in genetic diversity within species would seem to push the pendulum further towards ex situ. Without being able to delve into the particularities of the model, the results seemed plausible to me, assuming that the highest diversity was indeed found in the central part of the distribution. Genetic erosion ensues. Won’t be able to adapt. Need to collect!
I can’t remember if I did nibble it, but I certainly sent the link to the Crop Wild Relatives mailing list. And it elicited an interesting, skeptical reply from Prof. Jonathan Gressel of the Weizmann Institute of Science in Israel. The professor pointed to a possible mechanism by which climate change could conceivably increase genetic diversity.
Unfortunately it is common for modelers to to say that their research “shows” (in this case), demonstrates or even proves something. As a sometime modeler (first model on herbicide resistance published in the Journal of Theoretical Biology in 1978), the best models can do is suggest priorities for experimentation to validate them. Ignoring (or not knowing) one important parameter can skew the model. My mathematician colleague always kept mumbling at me: “Garbage in, Garbage Out”. I would hazard a guess that one parameter was left out of the simulations: the fact that sub-lethal stresses increase mutation rates. Thus, climate change stress will increase mutational diversity in pre-existing genes. For a discussion of this, see: Pest Management Science 67:253-257, 2011.
Oh no, you mean we have to do both ex situ and in situ? Well that won’t do at all. While I naturally hope Marleen Cobb successfully defended her PhD last week, I hope that when she comes round she’ll tweak her model and help us decide once and for all.
Nibbles: Plant data, Wild relatives, Citizen science, Danish pig breed, Fruit names, Genebanks big and small, Taxonomy, Seaweed, Weather data, IPR training, Caribbean & Pacific, Potato research at Birmingham, Taro training in PNG, BioAreas
- Latest Plant Press has interesting stuff on botanical data of various forms. Always worth a skim.
- CSA pamphlet on the importance of crop wild relatives. Why does this feel like a bandwagon? And how long to the backlash?
- And talking of bandwagons, here’s the latest from the one on citizen botany. Does indigenous tree knowledge count as citizen science? How about indigenous weed knowledge?
- And how about using your pet pig to reinvigorate a breed?
- Interesting take on fruit variety names. Can we crowdsource an answer?
- Everything about the opening of that new Mexican mega-genebank. Including the speeches. Nice-looking building, I must say. And from IRRI an example of a genebank from the other end of the scale in the Philippines. And similar, but different, from
CanadaColorado. - Biodiversity bigshots beg for naming blitz. Better hurry. And don’t forget the soil.
- Sargasso Sea coming ashore in Ghana is bad news for fisherfolk. Can they not eat it? Is it bad to ask that?
- How to find your way around weather data.
- Swedes to provide IPR training for PGR types.
- Island nations from opposite sides of the world brought together by agrobiodiversity. Full disclosure: I’ve worked with both regional PGR networks and want to again.
- Brits who worked on spuds.
- And Wontoks who worked on taro.
- Privatizing conservation.
Featured: Southern Leaf Blight
Robert takes a certain delight in adding his voice to the chorus questioning the Southern Leaf Blight metanarrative:
Isn’t it remarkable that this is the only (well-known?) incident of this nature in recent history? And that it only was an incident that cannot even be detected on the yield charts? Are the levels of diversity that we are maintaining in the fields perhaps sufficient?
What’s next for the chopping block? Potato blight and the Irish famine?