- Thai king has crop genebank on palace grounds.
- Fish in jars.
- Planning Plant Clinics.
- Plant Breeding for Drought Stress: The Project.
- Wait, the Nebraska National Guard has an agribusiness development team? Maybe they should talk to the people responsible for the previous bullet point?
- Kids! (And adults!) An Art Contest to celebrate ‘Ulu. Breadfruit, that is.
- Use of Agrobiodiversity for Pest and Disease Management. A slide show from Carlo Fadda at Bioversity.
- 3rd Annual Biodiversity Working for Farmers Tour in Idaho. 23rd June, you have been warned.
- Huge New York Times story on plant breeding and climate change.
- Bill Gates hails creativity for small farmers challenge.
- American ginseng: use it or lose it.
- Do you live in Ann Arbour? Do you want native plants for your garden? Yeah but how about American ginseng?
Would you eat this eggplant?
You heard of Buddha’s hands citrus, right? Well, now get a load of Buddha’s hands eggplant.
A more strategic approach to evaluation?
I feel we need evaluation data on ‘agronomic’ performance. Morphological description, in most cases, totally pointless.
That was the first response to my posting of the rice sheath blight story on GIPB the other day.
Somewhat provoked, one of the authors of the paper prepared this reposte.
Consider this like a “morphological FIGS” (Focused Identification of Germplasm Strategy), selecting the “best bet” set of accessions to meet the researchers’ objectives.
Yes of course we need more evaluation.
But look at the effort that went in to the screening of these 200. Imagine scaling that up to the whole collection of 110,000+ accessions. Impossible. Imagine even scaling up to the 5,000 we can characterize in one year. Impossible.
Then consider all the evaluation data IRRI has collected in the past on the genebank accessions and effectively discarded. (“Don’t throw it away! Give it to me … Thank you … Oh, I see what you mean. Throw it away” is the typical sequence of reactions we get from people convinced we shouldn’t discard it). Why discard it? Because it was all done using the quick-and-dirty anything-is-better-than-nothing approach of genebanks to characterizing and evaluating large collections. The experts won’t do it, we don’t know how to do it properly, so let’s just do what we can do. Silly.
When we evaluate accessions we have to evaluate them properly, led by the trait experts, and we can only ever hope to do that for small subsets of accessions.
Then consider the lack of progress even by the experts in evaluating diverse subsets (dare I say core collections?) for resistance to sheath blight.
Sheath blight is an unusual disease. Because of the mode of spread from one plant to the next (by fungal hyphae), the rate of spread is highly dependent on plant architecture. The experts felt this “noise” might be hiding the signal of physiological resistance that they wanted to detect. Therefore they should control for canopy architecture; therefore we should use characterization data to select accessions for evaluation.
The real message is not that characterization data are useful. The real message is that evaluation efforts must be focused more carefully on the right subset of accessions, choosing the “best bet” set for each request. Characterization data are just another type of data that may or may not help us to choose in the concept elaborated in FIGS.
Let the debate continue!
Nibbles: ITPGRFA, Hotspots, Adaptation, Agrobiodiversity, Potatoes and climate change, Cowpeas and drought, Apios, Tree planting, Fairtrade, Egyptian archaeobotany, Bolivian video
- All about the International Treaty on PGRFA.
- More, much more, on that climate change hotspots study.
- IDRC on climate change adaptation in Africa. Almost nothing on agricultural diversity as a coping mechanism.
- Unlike this.
- Or this, for that matter. Never knew the Basque country was such a hotbed of potato research.
- Or…oh forget it.
- What, in the name of all that is happy, is hopniss?
- Danone buys some goodwill.
- Fairtrade chocolate: this looks like it should be really important. Is it?
- So, you say you want to know what plant remains were found in the baskets in Tutankhamun’s tomb?
- Bolivian agricultural biodiversity, anyone?
Japanese genebank data online
While looking for something else, I happened across a paper describing the Japanese genebank’s new(ish) information system, NIASGBdb. I have some issues about the downloading options (e.g., there are annoying limits to the number of accessions), but it is nice to be able to search both characterization and evaluation data. I know you want to know, so I’ll tell you that the average culm height of accessions with very high resistance to sheath blight is 104cm, whereas that of those with very low resistance is 81cm. And no, I didn’t calculate any standard errors, or do any fancy multivariate statistics. But there’s nothing to stop you doing so.