Looking for leimotifs in the early history of wheat and rice

ResearchBlogging.orgThere are two papers out just now which review in detail archaeobotanical and genetic data to elucidate the early history of crops. Dorian Fuller and numerous co-authors do it for Asian rice (Oryza sativa) 1, Hakan Özkan and others do it for emmer wheat (Triticum dicoccoides). 2 And Fuller actually also comments on the emmer paper on his blog. 3

In such situations, my first instinct is to look for commonalities, rather than get lost in the specifics. 4 Certainly, the occasional difficulty of reconciling archaeobotanical and genetic data comes up in both reviews. Actually there’s a third paper out which looks at that too, suggesting that “genetic and archaeological studies represent complementary perspectives on domestication, each highlighting a different facet of this complex problem.” 5 Complexity is a word that recurs a lot, in fact. Here’s Fuller: “Asian rices have had a complex history.” And here’s Özkan: “The spread of domestic emmer would have been extremely complex…”

But the really interesting question to me is whether there are similarities within the complexity. As Tolstoy might have asked, are the early histories of different crops complex each after their own fashion? Fuller summarizes the emmer story as one of “multiple starts of cultivation, gradual domestication, but the possible predominance of one domesticated line at the end of the process,” and there certainly are some echoes of that in rice. But I want to focus on one little series of events or processes that occurs in both rice and emmer, in each case with its peculiarities, but nevertheless comparable.

Cultivated emmer (Triticum dicoccon) was developed from its wild progenitor (T. dicoccoides) in south-eastern Turkey. 6 It then spread to the north-east, where it came into contact with wild Aegilops tauschii. Somewhere in the corridor between Armenia and the Caspian Sea, hybridization between the two gave rise to hexaploid bread wheat from tetraploid emmer. Well, something kind of similar also happened in rice. Fuller’s paper has a nice diagram summarizing the relationship between japonica and indica rices. Simplifying wildly, japonica arose in China from wild Oryza rufipogon. It was then taken to India, where it came into contact with cultivated proto-indica rices and also the wild species from which that was derived (O. nirvana). Hybridization and back-crossing eventually led to fully indica varieties. A crop develops in one place, then moves somewhere else, where it interacts with something, leading to the development of a somewhat different crop.

Now, I’m not sure whether the differences in this process, in particular the fact that polyploidy was involved in the emmer case but not rice, are more important than the similarities. But I wonder if the domestication and spread of crops can perhaps be broken down into a series of similar tropes, or maybe leitmotifs, I’m not sure what one would call them. At the very least it might help people like me make sense of — and try to remember, and keep straight — the complexities.

Dangerous foods round-up

Playing follow-up this morning. Just noticed a couple of papers that deal with topics we’ve been considering here over the past couple of weeks. Remember the post about sorghum beer in Africa from a few days back? Well, it turns out it’s not all good news. There had to be a catch, right? And, following our discussion of a paper on the chemical ecology of cassava, there’s a vivid reminder of why detoxifying those tubers is still so important in some parts of Africa. 7

Diversity in a fungal symbiont affects rice performance

Nigel Chaffey over at Annals of Botany is really extraordinarily good at finding — and writing about — extraordinarily interesting plant stuff. Plus his Plant Cuttings is free. That’s why I always link to him, either in Nibbles or as a post. His latest offering is particularly agrobiodiversity-laden, with pieces on the results of the CGIAR Science Forum, the bad behaviour of some pollinators, rice, engineering a better photosynthesis, and Newton’s apple tree in space. I could have written a post about any of these, really, but why bother when Prof. Chaffey has done such a great job already?

Having said that, though, I still can’t resist making a particular mention of work by Caroline Angelard and others at the University of Lausanne in Switzerland. Their paper in Current Biology investigates the symbiotic interaction between an arbusculo-mycorrhizal fungus (AMF) and rice. These fungi consist of a common cytoplasm inhabited by populations of genetically different nuclei. When spores form, different ones end up with different nucleotype complements. Which can get mixed up again through genetic exchange between spores. So what? Well, because all this genetic toing and froing (or, technically, segregation) has only recently been discovered, “no attempts have been made to test whether this affects the symbiosis with plants.” Until now. And it turns out that it does. Segregation “can enhance the growth of rice up to five times, even though neither parental nor crossed AMF lines induced a positive growth response.”

So here’s another level of agricultural diversity to worry about. And what’s the betting that there is genetic diversity in rice as to its response to the genetic diversity of its symbiotic fungi?

Nibble: Conservation ag, Sahelian famines, Homegarden fertility, Annals of Botany news roundup, Carrot geneflow, Cyanide in crops, Texas rice breeding

Rooftop sake

There was a fun story about urban beekeepers in Tokyo yesterday. Keeping bees in cities is actually not huge news, though. There’s been a lot about it in the New York press lately, for example. But the Tokyo story also had this intriguing sidebar.

The beekeepers may be an odd sight in the Japanese capital, but they are not the only urban farmers — on a rooftop just blocks away, barefoot farmers were recently wading through almost knee-high mud to plant a wet rice field.

On top of the building of the Hakutsuru Sake Brewing Co., its employees and their spouses and children were screaming with excitement as they stomped barefoot, the mud squelching between their toes.

“Good job, good job! Well done!” said Asami Oda, 56, the vice president of Hakutsuru’s Tokyo office, who takes care of the rice paddies every day.

“We harvest 60 kilograms (130 pounds) of rice every year, from which we make 80 litres of sake. Of course it’s organic. I like having a pesticides-free harvest, which is also good for the honey bees,” he said.

Which made me scurry around the internet looking for photos. And while I was doing that, as coincidence would have it, another piece on rooftop vegetation popped up, this time bamboo on top of a museum. Never rains but it pours.